View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10561_low_2 (Length: 506)
Name: NF10561_low_2
Description: NF10561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10561_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 455; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 18 - 496
Target Start/End: Original strand, 34346173 - 34346651
Alignment:
| Q |
18 |
aattaagaccctataaatataacataattaactctcaaaccaacattattcaaacctaaatgaatatatgaagcagtaataataatgatagtatgtaaca |
117 |
Q |
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| T |
34346173 |
aattaagaccctataaatataacataattaactctcaaaccaacattattcaaacctaaatgaatatatgaagcagtaataataatgatagtatgtaaca |
34346272 |
T |
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| Q |
118 |
cgaggcatttgaattctctacggtcagtgaatgcacgcattcatgcagtcaacacattgatggtcgttagattatgatattgagcttgaaatttgaatcg |
217 |
Q |
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|||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | |
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| T |
34346273 |
cgagacatttgaattctctacagtcagtgaatgcacgcattcatgcagtcaacacatcgatggtcgttagattatgatattgagcttgaaatttgaattg |
34346372 |
T |
|
| Q |
218 |
tccgttcttaactcaacaaccactgatgcgctgattgtgtgaatgcgtacaattggtgactgcagggaatcaagattcgataggacatttgtctcactcg |
317 |
Q |
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| T |
34346373 |
tccgttcttaactcaacaaccactgatgcgctgattgtgtgaatgcttacaattggtgactgcagggaatcaagattcgataggacatttgtctcactcc |
34346472 |
T |
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| Q |
318 |
acacagcaacgatacatgaaatatttctccatttgacgaccacattcagcacaaacaactttctgaggtattccaccagtactcccaggaagaataagcc |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34346473 |
acacagcaacgatacatgaaatatttctccatttgacgaccacattcagcacaaacaactttctgaggtattccaccagtactcccaggaagaataagcc |
34346572 |
T |
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| Q |
418 |
tattacaatgatgtggttgctgaatttccttaatataatcattcaatgctggaacccaaccatcttgttcaatcctatg |
496 |
Q |
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| T |
34346573 |
tattacaatgatgtggttgctgaatttccttaatataatcattcaatgctggaacccaaccatcttgttcaatcctatg |
34346651 |
T |
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