View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10561_low_20 (Length: 222)
Name: NF10561_low_20
Description: NF10561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10561_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 192; Significance: 1e-104; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 11 - 206
Target Start/End: Original strand, 44221577 - 44221772
Alignment:
| Q |
11 |
agcagagacataaggtagctctaccaaaatctgcgacaaaaagggtgttgttaatattagattttcaagttttcaaactcaattaagtaataatcatttc |
110 |
Q |
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| T |
44221577 |
agcaaagacataaggtagctctaccaaaatctgcgacaaaaagggtgttgttaatattagattttcaagttttcaaactcaattaagtaataatcatttc |
44221676 |
T |
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| Q |
111 |
agcagcgtaaacaacaataatagttacctgtgaaaatgcatatggtaaggcagaatacattccagcagccttttctcgataaaatacagtcctttc |
206 |
Q |
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| T |
44221677 |
agcagcgtaaacaacaataatagttacctgtgaaaatgcatatggtaaggcagaatacattccagcagccttttctcgataaaatacagtcctttc |
44221772 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 118 - 206
Target Start/End: Original strand, 44232502 - 44232590
Alignment:
| Q |
118 |
taaacaacaataatagttacctgtgaaaatgcatatggtaaggcagaatacattccagcagccttttctcgataaaatacagtcctttc |
206 |
Q |
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| T |
44232502 |
taaacaatgataatagttacctgtgaaaatgcatagggtaaggcagagtacattccagcagctttttctctataaaatacagttctttc |
44232590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 11 - 206
Target Start/End: Original strand, 44209364 - 44209558
Alignment:
| Q |
11 |
agcagagacataaggtagctctaccaaaatctgcgacaaaaagggtgttgtt-aatattagattttcaagttttcaaactcaattaagtaataatcattt |
109 |
Q |
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| T |
44209364 |
agcaaagacataaggtagctctaccaaaatctg--acaaaaaggaaggagtttaatattacaatttcttgtttgcaaacaaacttaagcgatagtaatga |
44209461 |
T |
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| Q |
110 |
cagcagcgtaaacaacaataatagttacctgtgaaaatgcatatggtaaggcagaatacattccagcagccttttctcgataaaatacagtcctttc |
206 |
Q |
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| T |
44209462 |
cagtagagtaaacaataattacagttacctgtgaaaatgcatagggtaaggcagagtacattccagcagctttttctctattaaatacagttctttc |
44209558 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 206
Target Start/End: Original strand, 43455647 - 43455699
Alignment:
| Q |
154 |
ggtaaggcagaatacattccagcagccttttctcgataaaatacagtcctttc |
206 |
Q |
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| T |
43455647 |
ggtaaagcagaatacattccagcagctctttctcgatagaatacagttctttc |
43455699 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 134 - 206
Target Start/End: Complemental strand, 2879122 - 2879050
Alignment:
| Q |
134 |
ttacctgtgaaaatgcatatggtaaggcagaatacattccagcagccttttctcgataaaatacagtcctttc |
206 |
Q |
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| T |
2879122 |
ttacctgtgcaagtgcatagggtaaggcagaatacattccagcagctctttctctataaaaaacagttctttc |
2879050 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 134 - 179
Target Start/End: Original strand, 2895783 - 2895828
Alignment:
| Q |
134 |
ttacctgtgaaaatgcatatggtaaggcagaatacattccagcagc |
179 |
Q |
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| T |
2895783 |
ttacctgtgcaaatgcatagggtaaggcagaatacattccagcagc |
2895828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 134 - 179
Target Start/End: Complemental strand, 2888590 - 2888545
Alignment:
| Q |
134 |
ttacctgtgaaaatgcatatggtaaggcagaatacattccagcagc |
179 |
Q |
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||||||||| ||||||||| ||||||||||||||||| |||||||| |
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| T |
2888590 |
ttacctgtgcaaatgcataaggtaaggcagaatacatcccagcagc |
2888545 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 187
Target Start/End: Complemental strand, 49774754 - 49774702
Alignment:
| Q |
135 |
tacctgtgaaaatgcatatggtaaggcagaatacattccagcagccttttctc |
187 |
Q |
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||||||| |||||||||||| || || || |||||||||||||||||||||| |
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| T |
49774754 |
tacctgtccaaatgcatatggcaatgctgagtacattccagcagccttttctc |
49774702 |
T |
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