View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10561_low_4 (Length: 401)
Name: NF10561_low_4
Description: NF10561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10561_low_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 11 - 382
Target Start/End: Original strand, 53464545 - 53464916
Alignment:
| Q |
11 |
cataggtgtagtgcaccttaatttgatttaagacaaaatgcnnnnnnnggtcttcaatcatgttcgctatttcgtctagtcaaggtggtttatcttgtct |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53464545 |
cataggtgtagtgcaccttaatttgatttaagacaaaatgcaaaaaaaggtcttcaatcatgttcgctatttcgtctagtcaaggtggtttatcttgtct |
53464644 |
T |
|
| Q |
111 |
attttgcaatactaaagaaggaaatctgatggaacactgcatggtttaagttcaaactctactttgcttgttgataagggtcacaactcacaacactata |
210 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53464645 |
attttgcaataccaaagaaggaaatctgatggaacactgcatggtttaagttcaaactctactttgcttgttgataagggtcacaactcacaacactata |
53464744 |
T |
|
| Q |
211 |
tatgcttaaataataattagtaattaatatcatacattaattttcaaagacnnnnnnncaatacagataattaattaatcttcatattgggtaattaaat |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
53464745 |
tatgcttaaataataattagtaattaatatcatacattaattttcaaagacaaaaaaacaatacagataattaattaatcttcatattgggtaattatat |
53464844 |
T |
|
| Q |
311 |
attttaattaatttagtttcatatgatcatcgaccgacaaaggatccaaactgtgccattaatgaaggcgac |
382 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53464845 |
attttaattaatttagtttcatttgatcatcgaccgacaaaggatccaaactgtgccattaatgaaggcgac |
53464916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University