View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10561_low_6 (Length: 386)
Name: NF10561_low_6
Description: NF10561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10561_low_6 |
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| [»] scaffold0022 (2 HSPs) |
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Alignment Details
Target: scaffold0022 (Bit Score: 275; Significance: 1e-154; HSPs: 2)
Name: scaffold0022
Description:
Target: scaffold0022; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 11 - 317
Target Start/End: Complemental strand, 65729 - 65423
Alignment:
| Q |
11 |
cagagagtaaaaccgcgtcgttttggacaaatgaaaaacacgtaaactacctcaatactatggaagcttcttttcttcgtacaatgttccaaaacaaagg |
110 |
Q |
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| T |
65729 |
cagaaagtaaaaccacgtcgttttggacaaatgaaaaacacgtaaactacctcaatactatggaagcttcttttcttcgtacaatgttccaaaacaaagg |
65630 |
T |
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| Q |
111 |
ttgtcgttcttcttcttcccatcacagtcgtcaaattcttcgactcgatcgacaacttcccgatagctctgaatcaacccttgatttgaaacctcaccat |
210 |
Q |
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| T |
65629 |
ttgtcgttcttcttcttcccatcacagccgtcaaattcttcgactcgatcgacaacttcccgatagctctgaatcaacccttgatttgaaacctcaccat |
65530 |
T |
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| Q |
211 |
ggaagccgcaccagaaaacaccataaaacttcaggtatatgatcgtttttcatctcatcttcttatcattgttctcaaattgtaggttcgtcttaagtta |
310 |
Q |
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| T |
65529 |
ggaagccgcaccagaaaacaccataaaacttcaggtatatgatcgtttttcatctcatcttcttatccttgttcccaaactgtaggttcgtcctaggtta |
65430 |
T |
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| Q |
311 |
ccaaatt |
317 |
Q |
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| T |
65429 |
ccaaatt |
65423 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0022; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 334 - 371
Target Start/End: Complemental strand, 64833 - 64796
Alignment:
| Q |
334 |
cattgataaatgatctcttttaatttaactaaaggttt |
371 |
Q |
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| T |
64833 |
cattgataaatgatctcttttaatttaactaatggttt |
64796 |
T |
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