View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10561_low_8 (Length: 323)
Name: NF10561_low_8
Description: NF10561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10561_low_8 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 253; Significance: 1e-141; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 18 - 310
Target Start/End: Original strand, 44523536 - 44523829
Alignment:
| Q |
18 |
aattgtttcatactttgtctctttccacaagcacatcacttcaccttatgtggtgtttctttcacctcttcaaaacaccannnnnnngtttaacaaacac |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
44523536 |
aattgtttcatactttgtctctttccacaagcacatcacttcaccttctgtggtgtttctttcacctcttcaaaacaccatttttttgtttaacaaacac |
44523635 |
T |
|
| Q |
118 |
cattttcttgtcaataatttatggcatatgtacgatgtattaacatacaagccaaaattaacccacgctgttcatttaaaacgagaaccagattctatat |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44523636 |
cattttcttgtcaataatttatggcatatgtacgatgtattaacatacaagccaaaattaacccacgctgttcatttaaaacgagaaccagattctatat |
44523735 |
T |
|
| Q |
218 |
ttgtctatttatggatttgtttgtcaatctgttgtgaattcatgatc-agtattctccaaattgcagttaactttgattcctcactatttttct |
310 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44523736 |
ttgtctatttatggacttgtttgtcaatctgttgtgaattcatgatcaaatattctccaaattgcagttaactttgattcctcactatttttct |
44523829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 20 - 129
Target Start/End: Complemental strand, 44524135 - 44524023
Alignment:
| Q |
20 |
ttgtttcatactttgtctctttccacaagcacatcacttcac--cttatgtg---gtgtttctttcacctcttcaaaacaccannnnnnngtttaacaaa |
114 |
Q |
| |
|
|||||||||| ||| ||||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||||| ||| |||||||||| |
|
|
| T |
44524135 |
ttgtttcatattttttctctttccacaagcacatcacttcacctcttctgtggtagtgtttctttcacctcttcaaaacgcca--tttttgtttaacaaa |
44524038 |
T |
|
| Q |
115 |
caccattttcttgtc |
129 |
Q |
| |
|
|||||||||| |||| |
|
|
| T |
44524037 |
caccattttcatgtc |
44524023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 39 - 310
Target Start/End: Complemental strand, 5750959 - 5750689
Alignment:
| Q |
39 |
tttccacaagcacatcacttcaccttatgtggtgtttctttcacctcttcaaaacaccannnnnnngtttaacaaacaccattttcttgtcaataattta |
138 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| |
|
|
| T |
5750959 |
tttccacaagcacatcacttcaccttctgtggtgtttctttcacctcttcaaaacaccatttttc-gtttaacgaacaccattttcttgtcaataattta |
5750861 |
T |
|
| Q |
139 |
tggcatatgtacgatgtattaacatacaagccaaaattaacccacgctgttcatttaaaacgagaaccagattctatatttgtctatttatggatttgtt |
238 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| ||||||||||||||||||| ||||| |
|
|
| T |
5750860 |
tggcatatgtaccatgtattaacatacaagccaaaattaacccacgctgttcatttaaaaagagaaccaaattccatatttgtctatttatggacttgtt |
5750761 |
T |
|
| Q |
239 |
tgtcaatctgttgtgaattcatgatcagtattctccaaattgcagttaactttgattcctcactatttttct |
310 |
Q |
| |
|
||||||||||||||| |||||||||| ||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
5750760 |
tgtcaatctgttgtgccttcatgatcaatattctccaaattgcggttaactttgattcctcactatttttct |
5750689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 23 - 97
Target Start/End: Original strand, 5750392 - 5750469
Alignment:
| Q |
23 |
tttcatactttgtctctttccacaagcacatcacttcaccttatgtg---gtgtttctttcacctcttcaaaacacca |
97 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||| |||| ||||||| |||||||||||||||||||| |
|
|
| T |
5750392 |
tttcatactttttctctttccacaagcacatcacttcaccttctgtggtagtgtttcattcacctcttcaaaacacca |
5750469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 44 - 150
Target Start/End: Original strand, 20353430 - 20353537
Alignment:
| Q |
44 |
acaagcacatcacttcaccttatgtggt---gtttctttcacctcttcaaaacaccannnnnnngtttaacaaacaccattttcttgtcaataatttatg |
140 |
Q |
| |
|
||||||||||||||||||||| ||| || |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| |
|
|
| T |
20353430 |
acaagcacatcacttcaccttctgttgtagtgtttctttcacctcttcaaaacaccattttt--gtttaacaaacaccattttcttgtcaatattttatg |
20353527 |
T |
|
| Q |
141 |
gcatatgtac |
150 |
Q |
| |
|
|||||||||| |
|
|
| T |
20353528 |
gcatatgtac |
20353537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 44 - 150
Target Start/End: Complemental strand, 32555576 - 32555466
Alignment:
| Q |
44 |
acaagcacatcacttcaccttatgtggt---gtttctttcacc---tcttcaaaacaccannnnnnngtttaacaaacaccattttcttgtcaataattt |
137 |
Q |
| |
|
||||||||||||||||||||| | |||| |||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
32555576 |
acaagcacatcacttcaccttctctggtagtgtttctttcaccacctcttcaaaacaccattttt--gtttaacaaacaccattttcttgtcaataattt |
32555479 |
T |
|
| Q |
138 |
atggcatatgtac |
150 |
Q |
| |
|
||||||||||||| |
|
|
| T |
32555478 |
atggcatatgtac |
32555466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 129
Target Start/End: Original strand, 32555125 - 32555210
Alignment:
| Q |
44 |
acaagcacatcacttcaccttatgtggt---gtttctttcacctcttcaaaacaccannnnnnngtttaacaaacaccattttcttgtc |
129 |
Q |
| |
|
||||| ||||||||||||||| |||||| |||||||||||||||||||||||||| |||||||||||||||||||| |||| |
|
|
| T |
32555125 |
acaagaacatcacttcacctt-tgtggtagtgtttctttcacctcttcaaaacacca--tttttgtttaacaaacaccattttcatgtc |
32555210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 256 - 310
Target Start/End: Complemental strand, 38367824 - 38367770
Alignment:
| Q |
256 |
ttcatgatcagtattctccaaattgcagttaactttgattcctcactatttttct |
310 |
Q |
| |
|
|||||||||| |||||||||| ||||| |||| ||||||||||| || ||||||| |
|
|
| T |
38367824 |
ttcatgatcaatattctccaatttgcatttaaatttgattcctcgctgtttttct |
38367770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 54
Target Start/End: Complemental strand, 31974242 - 31974208
Alignment:
| Q |
20 |
ttgtttcatactttgtctctttccacaagcacatc |
54 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| |
|
|
| T |
31974242 |
ttgtttcatactttttctctttccacaagcacatc |
31974208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University