View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10561_low_9 (Length: 295)
Name: NF10561_low_9
Description: NF10561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10561_low_9 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 3 - 282
Target Start/End: Complemental strand, 40514052 - 40513773
Alignment:
| Q |
3 |
gaatcaaagttgacccattattatatggactttggagctgccatgcccaatttggaacgggagcagattccatcctattctctattgctctttcctgtaa |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40514052 |
gaatcaaagttgacccattattatatggactttggagctgccatgcccaatttggaacgggagcagattccatcctattctctattgctctttcctgtaa |
40513953 |
T |
|
| Q |
103 |
atagaacacaaataatcataattcatatttcataaccagcataagattcttnnnnnnnnnnnnnnnnncagcataagatattgaagcaaaatcaaattga |
202 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
40513952 |
atagaacacaaataatcataattcatatttcataaccagcagaagattcttaaaaaagaaaaagaaaacagcataagatattgaagcaaaatcaaattga |
40513853 |
T |
|
| Q |
203 |
atagtcataattcataactagctagcagaagatactgaagcaaaattagtattcaccttacacacgggaaagtaattagt |
282 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40513852 |
atagtcataattcataactagctagcagaagatactgaagcaaaattagtattcaccttacacacgggaaagtaattagt |
40513773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University