View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10562_low_10 (Length: 220)
Name: NF10562_low_10
Description: NF10562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10562_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 195; Significance: 1e-106; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 13 - 207
Target Start/End: Original strand, 47268045 - 47268239
Alignment:
| Q |
13 |
gagaagaaggtttcatattactagtttgtttgtcctttgaagctatgaagaggtttgctaaagagttagatgagatgcttggtaaacaaaattaacctaa |
112 |
Q |
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| T |
47268045 |
gagaagaaggtttcatattactagtttgtttgtcctttgaagctatgaagaggtttgctaaagagttagatgagatgcttggtaaacaaaattaacctaa |
47268144 |
T |
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| Q |
113 |
agcaagtggttcctagttttgtcatgtttatctttttgtttgtcgtttgtgatgttccaagtactcattcttgtctcaaattgaagtaaaagttg |
207 |
Q |
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| T |
47268145 |
agcaagtggttcctagttttgtcatgtttatctttttgtttgtcgtttgtgatgttccaagtactcattcttgtctcaaattgaagtaaaagttg |
47268239 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 13 - 111
Target Start/End: Original strand, 47243141 - 47243239
Alignment:
| Q |
13 |
gagaagaaggtttcatattactagtttgtttgtcctttgaagctatgaagaggtttgctaaagagttagatgagatgcttggtaaacaaaattaaccta |
111 |
Q |
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| T |
47243141 |
gagaagaagggttaatattaccaatttgcttgccccctgaagatatgaagaggtttgctaaagagttagatgatatgcttggtaaccaaaattatccta |
47243239 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 13 - 137
Target Start/End: Original strand, 47279417 - 47279540
Alignment:
| Q |
13 |
gagaagaaggtttcatattactagtttgtttgtcctttgaagctatgaagaggtttgctaaagagttagatgagatgcttggtaaacaaaattaacctaa |
112 |
Q |
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| T |
47279417 |
gagaagaaggtttgatattactaattttcttaacctctgaagttatgaagaggtttgctgaagagttagataagatgtttggtaaccaaaatcaacctac |
47279516 |
T |
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| Q |
113 |
agcaagtggttcctagttttgtcat |
137 |
Q |
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| T |
47279517 |
aacaattgg-gcctagttttgtcat |
47279540 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 13 - 137
Target Start/End: Original strand, 47284010 - 47284133
Alignment:
| Q |
13 |
gagaagaaggtttcatattactagtttgtttgtcctttgaagctatgaagaggtttgctaaagagttagatgagatgcttggtaaacaaaattaacctaa |
112 |
Q |
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| T |
47284010 |
gagaagaaggtttaatattactaattttcttaacctctgaagttatgaagaggtttgctgaagagttagataagatgtttggtaatcaaaatcaacctac |
47284109 |
T |
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| Q |
113 |
agcaagtggttcctagttttgtcat |
137 |
Q |
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| T |
47284110 |
aacgattgg-tcctagttttgtcat |
47284133 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 37 - 111
Target Start/End: Complemental strand, 47292179 - 47292105
Alignment:
| Q |
37 |
tttgtttgtcctttgaagctatgaagaggtttgctaaagagttagatgagatgcttggtaaacaaaattaaccta |
111 |
Q |
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| T |
47292179 |
tttgtttgccctctgaagatatgaagaggtttgcaaaagagttggatgagatgcttggtaaccaaaattatccta |
47292105 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 37 - 104
Target Start/End: Complemental strand, 47298786 - 47298719
Alignment:
| Q |
37 |
tttgtttgtcctttgaagctatgaagaggtttgctaaagagttagatgagatgcttggtaaacaaaat |
104 |
Q |
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| T |
47298786 |
tttgtttgccctctgaagatatgaagaggtttgcaaaagagttggatgagatgcttggtaaccaaaat |
47298719 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 13 - 111
Target Start/End: Original strand, 47257268 - 47257366
Alignment:
| Q |
13 |
gagaagaaggtttcatattactagtttgtttgtcctttgaagctatgaagaggtttgctaaagagttagatgagatgcttggtaaacaaaattaaccta |
111 |
Q |
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| T |
47257268 |
gagaagaagggttaatattaccaatttgcttgcctcctgaagatatgaagaggtttgttaaggagttagatgatatgcttggtaaccaaaattatccta |
47257366 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 14 - 97
Target Start/End: Original strand, 20519818 - 20519901
Alignment:
| Q |
14 |
agaagaaggtttcatattactagtttgtttgtcctttgaagctatgaagaggtttgctaaagagttagatgagatgcttggtaa |
97 |
Q |
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| T |
20519818 |
agaaaaaggtttaatattaccaatttctttgccttatgaagatatgaagaggtttgctaaagagttagatgagatgcttggtaa |
20519901 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 13 - 105
Target Start/End: Original strand, 32731808 - 32731900
Alignment:
| Q |
13 |
gagaagaaggtttcatattactagtttgtttgtcctttgaagctatgaagaggtttgctaaagagttagatgagatgcttggtaaacaaaatt |
105 |
Q |
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|||||||||| || ||||| | | |||| ||| || ||||| |||||||||||||||||||||||||||||| ||||||||||| ||||||| |
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| T |
32731808 |
gagaagaagggttaatatttccaatttgcttgccccctgaagatatgaagaggtttgctaaagagttagatgatatgcttggtaaccaaaatt |
32731900 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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