View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10562_low_2 (Length: 337)
Name: NF10562_low_2
Description: NF10562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10562_low_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 297; Significance: 1e-167; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 321
Target Start/End: Complemental strand, 5289551 - 5289231
Alignment:
| Q |
1 |
gtgttggttgtttgttctgaagtcaccgctgtcacattccgtggccccagtgatactcacttggacagccttgttgggcaagcactgtttggagatggag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5289551 |
gtgttggttgtttgttctgaagtcaccgctgtcacattccgtggccccagtgatactcacttggacagccttgttgggcaagcactgtttggagatggag |
5289452 |
T |
|
| Q |
101 |
ctgctgctctgattgttggttctgacccagtaccagaaattgagaaacctatatttgagatggtttggactgcacaaacaattgctcctgatagtgaagg |
200 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
5289451 |
ctgctgctcttattgttggttctgacccagtaccagaaattgagaaacctatatttgagatggtttggactgcacaaacaattgctccggatagtgaagg |
5289352 |
T |
|
| Q |
201 |
agccattgatggtcaccttcgtgaagctggactaacatttcaccttcttaaagatgttcctgggattgtttcaaagaacattactaaagcattggttgac |
300 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
5289351 |
agccattgatggccaccttcgtgaagctggactaacatttcaccttcttaaagatgttcctgggattgtttcaaagaacatcactaaagcattggttgag |
5289252 |
T |
|
| Q |
301 |
gcttttgagccattgggaatt |
321 |
Q |
| |
|
||||| ||||||||||||||| |
|
|
| T |
5289251 |
gctttcgagccattgggaatt |
5289231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 321
Target Start/End: Original strand, 5310665 - 5310985
Alignment:
| Q |
1 |
gtgttggttgtttgttctgaagtcaccgctgtcacattccgtggccccagtgatactcacttggacagccttgttgggcaagcactgtttggagatggag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
5310665 |
gtgttggttgtttgttctgaagtcaccgctgtcacatttcgtggccccagtgatactcacttggacagccttgttgggcaagcattgtttggagatggag |
5310764 |
T |
|
| Q |
101 |
ctgctgctctgattgttggttctgacccagtaccagaaattgagaaacctatatttgagatggtttggactgcacaaacaattgctcctgatagtgaagg |
200 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5310765 |
ctgctgctcttattgttggttctgacccagtaccagaaattgagaaacctatatttgagatggtttggactgcacaaacaattgctcctgatagtgaagg |
5310864 |
T |
|
| Q |
201 |
agccattgatggtcaccttcgtgaagctggactaacatttcaccttcttaaagatgttcctgggattgtttcaaagaacattactaaagcattggttgac |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
5310865 |
agccattgatggtcaccttcgtgaagctggactaacatttcaccttcttaaagatgttcctgggattgtctcaaagaacattactaaagcattggttgag |
5310964 |
T |
|
| Q |
301 |
gcttttgagccattgggaatt |
321 |
Q |
| |
|
||||| ||||||||||||||| |
|
|
| T |
5310965 |
gctttcgagccattgggaatt |
5310985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 321
Target Start/End: Original strand, 5284576 - 5284896
Alignment:
| Q |
1 |
gtgttggttgtttgttctgaagtcaccgctgtcacattccgtggccccagtgatactcacttggacagccttgttgggcaagcactgtttggagatggag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||||| ||||| |||||||| |||||||| ||||||||||||| |
|
|
| T |
5284576 |
gtgttggttgtttgttctgaagtcaccgctgtcacatttcgtggccctagcgatactcacttagacagtcttgttggacaagcactatttggagatggag |
5284675 |
T |
|
| Q |
101 |
ctgctgctctgattgttggttctgacccagtaccagaaattgagaaacctatatttgagatggtttggactgcacaaacaattgctcctgatagtgaagg |
200 |
Q |
| |
|
|||||||||| |||||||| ||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5284676 |
ctgctgctcttattgttggctctgacccaataccagaaattgagagacctatatttgagatggtttggactgcacaaacaattgctcctgatagtgaagg |
5284775 |
T |
|
| Q |
201 |
agccattgatggtcaccttcgtgaagctggactaacatttcaccttcttaaagatgttcctgggattgtttcaaagaacattactaaagcattggttgac |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5284776 |
agccattgatggtcaccttcgtgaagctggactaacatttcaccttcttaaagatgttcctgggattgtttcaaagaacattactaaagcattggttgag |
5284875 |
T |
|
| Q |
301 |
gcttttgagccattgggaatt |
321 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
5284876 |
gcttttgagccattgggaatt |
5284896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 321
Target Start/End: Original strand, 5302764 - 5303084
Alignment:
| Q |
1 |
gtgttggttgtttgttctgaagtcaccgctgtcacattccgtggccccagtgatactcacttggacagccttgttgggcaagcactgtttggagatggag |
100 |
Q |
| |
|
||||||||||| ||||| || ||||||||||||||||| |||||||| |||||||||||||||||||| |||||||| |||||||| ||||||||||||| |
|
|
| T |
5302764 |
gtgttggttgtatgttcagaggtcaccgctgtcacatttcgtggccctagtgatactcacttggacagtcttgttggacaagcactatttggagatggag |
5302863 |
T |
|
| Q |
101 |
ctgctgctctgattgttggttctgacccagtaccagaaattgagaaacctatatttgagatggtttggactgcacaaacaattgctcctgatagtgaagg |
200 |
Q |
| |
|
|||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5302864 |
ctgctgctcttattgttggctctgaccccgtaccagaaattgagaaacctatatttgagatggtttggactgcacaaacaattgctcctgatagtgaagg |
5302963 |
T |
|
| Q |
201 |
agccattgatggtcaccttcgtgaagctggactaacatttcaccttcttaaagatgttcctgggattgtttcaaagaacattactaaagcattggttgac |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5302964 |
agccattgatggtcaccttcgtgaagctggactaacatttcaccttcttaaagatgttcctgggattgtttcaaagaacattactaaagcattggttgac |
5303063 |
T |
|
| Q |
301 |
gcttttgagccattgggaatt |
321 |
Q |
| |
|
|||||||||||| |||||||| |
|
|
| T |
5303064 |
gcttttgagccactgggaatt |
5303084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 321
Target Start/End: Original strand, 5315379 - 5315699
Alignment:
| Q |
1 |
gtgttggttgtttgttctgaagtcaccgctgtcacattccgtggccccagtgatactcacttggacagccttgttgggcaagcactgtttggagatggag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||| |||||||||||||| |||||||| ||||||||||||| |
|
|
| T |
5315379 |
gtgttggttgtttgttctgaagtcaccgctgtcacatttcgtggtcctagtgatactcacttagacagccttgttggacaagcactatttggagatggag |
5315478 |
T |
|
| Q |
101 |
ctgctgctctgattgttggttctgacccagtaccagaaattgagaaacctatatttgagatggtttggactgcacaaacaattgctcctgatagtgaagg |
200 |
Q |
| |
|
| |||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5315479 |
cggctgctcttattgttggctctgacccagtaccagaaatagagaaacctatatttgagatggtttggactgcacaaacaattgctcctgatagtgaagg |
5315578 |
T |
|
| Q |
201 |
agccattgatggtcaccttcgtgaagctggactaacatttcaccttcttaaagatgttcctgggattgtttcaaagaacattactaaagcattggttgac |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5315579 |
agccattgatggtcaccttcgtgaagctggactaacatttcaccttcttaaagatgttcctgggattgtttcaaagaacattactaaagcattggttgag |
5315678 |
T |
|
| Q |
301 |
gcttttgagccattgggaatt |
321 |
Q |
| |
|
||||| ||||||||||||||| |
|
|
| T |
5315679 |
gctttcgagccattgggaatt |
5315699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 4 - 321
Target Start/End: Complemental strand, 46706839 - 46706522
Alignment:
| Q |
4 |
ttggttgtttgttctgaagtcaccgctgtcacattccgtggccccagtgatactcacttggacagccttgttgggcaagcactgtttggagatggagctg |
103 |
Q |
| |
|
||||||||||||||||||||||| || ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
46706839 |
ttggttgtttgttctgaagtcactgcagtcacattccgcggccctagtgatactcacttggacagccttgttgggcaagcactgtttggagtcagagctg |
46706740 |
T |
|
| Q |
104 |
ctgctctgattgttggttctgacccagtaccagaaattgagaaacctatatttgagatggtttggactgcacaaacaattgctcctgatagtgaaggagc |
203 |
Q |
| |
|
|||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| |
|
|
| T |
46706739 |
ctgcacttattgttggttctgatccagtaccagaaattgagaaacctatatttgagatggtttggacttcacaaacaattgctccagatagtgaaggagc |
46706640 |
T |
|
| Q |
204 |
cattgatggtcaccttcgtgaagctggactaacatttcaccttcttaaagatgttcctgggattgtttcaaagaacattactaaagcattggttgacgct |
303 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| ||||||||| ||||| ||| |
|
|
| T |
46706639 |
cattgatggtcaccttcgtgaagctggactaacattccaccttctaaaagatgttcctgggattgtttcaaagaacattgataaagcattagttgaggct |
46706540 |
T |
|
| Q |
304 |
tttgagccattgggaatt |
321 |
Q |
| |
|
|| | |||||||||||| |
|
|
| T |
46706539 |
ttccaaccattgggaatt |
46706522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 233; Significance: 1e-129; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 321
Target Start/End: Original strand, 44133047 - 44133367
Alignment:
| Q |
1 |
gtgttggttgtttgttctgaagtcaccgctgtcacattccgtggccccagtgatactcacttggacagccttgttgggcaagcactgtttggagatggag |
100 |
Q |
| |
|
||||||||||| |||||||||||||| || |||||||| || ||||| ||||||||||||||||||||||||||||| || || || ||||||||||||| |
|
|
| T |
44133047 |
gtgttggttgtctgttctgaagtcactgcagtcacatttcgcggccctagtgatactcacttggacagccttgttggacaggccctatttggagatggag |
44133146 |
T |
|
| Q |
101 |
ctgctgctctgattgttggttctgacccagtaccagaaattgagaaacctatatttgagatggtttggactgcacaaacaattgctcctgatagtgaagg |
200 |
Q |
| |
|
||||||| || ||||||||||| || ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
44133147 |
ctgctgcactaattgttggttcagatccagtaccagaaattgagaaaccaatatttgagatggtttggactgcacaaacaattgctccagatagtgaagg |
44133246 |
T |
|
| Q |
201 |
agccattgatggtcaccttcgtgaagctggactaacatttcaccttcttaaagatgttcctgggattgtttcaaagaacattactaaagcattggttgac |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |
|
|
| T |
44133247 |
agccattgatggtcaccttcgtgaagctggactaacatttcaccttcttaaagatgttcctgggattgtttcaaagaacatcaataaagcattggttgag |
44133346 |
T |
|
| Q |
301 |
gcttttgagccattgggaatt |
321 |
Q |
| |
|
||||| || ||||| |||||| |
|
|
| T |
44133347 |
gctttcgaaccattaggaatt |
44133367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 321
Target Start/End: Original strand, 44141469 - 44141789
Alignment:
| Q |
1 |
gtgttggttgtttgttctgaagtcaccgctgtcacattccgtggccccagtgatactcacttggacagccttgttgggcaagcactgtttggagatggag |
100 |
Q |
| |
|
||||||||||| |||||||||||||| || |||||||| || ||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||| |
|
|
| T |
44141469 |
gtgttggttgtctgttctgaagtcactgcagtcacatttcgcggccctagtgatactcacttggacagccttgttggacaagcactatttggagatggag |
44141568 |
T |
|
| Q |
101 |
ctgctgctctgattgttggttctgacccagtaccagaaattgagaaacctatatttgagatggtttggactgcacaaacaattgctcctgatagtgaagg |
200 |
Q |
| |
|
||||||| || ||||||||||| || ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
44141569 |
ctgctgcactaattgttggttcagatccagtaccagaaattgagaaaccaatatttgagatggtttggactgcacaaacaattgctccagatagtgaagg |
44141668 |
T |
|
| Q |
201 |
agccattgatggtcaccttcgtgaagctggactaacatttcaccttcttaaagatgttcctgggattgtttcaaagaacattactaaagcattggttgac |
300 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |
|
|
| T |
44141669 |
ggccattgacggtcaccttcgtgaagctggactaacatttcaccttcttaaagatgttcctgggattgtttcaaagaacatcaataaagcattggttgag |
44141768 |
T |
|
| Q |
301 |
gcttttgagccattgggaatt |
321 |
Q |
| |
|
||||| || ||||| |||||| |
|
|
| T |
44141769 |
gctttcgaaccattaggaatt |
44141789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 321
Target Start/End: Original strand, 44128842 - 44129162
Alignment:
| Q |
1 |
gtgttggttgtttgttctgaagtcaccgctgtcacattccgtggccccagtgatactcacttggacagccttgttgggcaagcactgtttggagatggag |
100 |
Q |
| |
|
||||||||||| |||||||||||||| || |||||||| || ||||| ||||||||||||||||||||||||||||| || || || ||||||||||||| |
|
|
| T |
44128842 |
gtgttggttgtctgttctgaagtcactgcagtcacatttcgcggccctagtgatactcacttggacagccttgttggacaggccctatttggagatggag |
44128941 |
T |
|
| Q |
101 |
ctgctgctctgattgttggttctgacccagtaccagaaattgagaaacctatatttgagatggtttggactgcacaaacaattgctcctgatagtgaagg |
200 |
Q |
| |
|
||||||| || ||||||||||| || ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
44128942 |
ctgctgcactaattgttggttcagatccagtaccagaaattgagaaaccaatatttgagatggtttggactgcacaaacaattgctccagatagtgaagg |
44129041 |
T |
|
| Q |
201 |
agccattgatggtcaccttcgtgaagctggactaacatttcaccttcttaaagatgttcctgggattgtttcaaagaacattactaaagcattggttgac |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |||||||| |
|
|
| T |
44129042 |
agccattgatggtcaccttcgtgaagctggactaacatttcaccttcttaaagatgttcctgggattgtttcaaagaacatcaataaagctttggttgag |
44129141 |
T |
|
| Q |
301 |
gcttttgagccattgggaatt |
321 |
Q |
| |
|
||||| || ||||| |||||| |
|
|
| T |
44129142 |
gctttcgaaccattaggaatt |
44129162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 305
Target Start/End: Original strand, 1478267 - 1478571
Alignment:
| Q |
1 |
gtgttggttgtttgttctgaagtcaccgctgtcacattccgtggccccagtgatactcacttggacagccttgttgggcaagcactgtttggagatggag |
100 |
Q |
| |
|
||||||||||||||||||||||| || || || ||||||||||| || ||||||||||| |||||||| |||||||| |||||||| ||||||||||| | |
|
|
| T |
1478267 |
gtgttggttgtttgttctgaagttactgcagtgacattccgtggtcctagtgatactcatttggacagtcttgttggacaagcactatttggagatggtg |
1478366 |
T |
|
| Q |
101 |
ctgctgctctgattgttggttctgacccagtaccagaaattgagaaacctatatttgagatggtttggactgcacaaacaattgctcctgatagtgaagg |
200 |
Q |
| |
|
||||||| || |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| || |
|
|
| T |
1478367 |
ctgctgcactcattgttggttctgacccaataccagaaattgagaaacctatatttgagatggtttggactgcacaaacaattgctccagacagtgaggg |
1478466 |
T |
|
| Q |
201 |
agccattgatggtcaccttcgtgaagctggactaacatttcaccttcttaaagatgttcctgggattgtttcaaagaacattactaaagcattggttgac |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || |
|
|
| T |
1478467 |
agccattgatggtcaccttcgtgaagctggtctaacatttcaccttcttaaagatgttcctgggattgtttcaaagaacattgataaagcattggtcgag |
1478566 |
T |
|
| Q |
301 |
gcttt |
305 |
Q |
| |
|
||||| |
|
|
| T |
1478567 |
gcttt |
1478571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 1 - 294
Target Start/End: Original strand, 1482461 - 1482754
Alignment:
| Q |
1 |
gtgttggttgtttgttctgaagtcaccgctgtcacattccgtggccccagtgatactcacttggacagccttgttgggcaagcactgtttggagatggag |
100 |
Q |
| |
|
||||||||||||||||||||||| || || || ||||||||||| || ||||||||||| |||||||| |||||||| |||||||| ||||||||||||| |
|
|
| T |
1482461 |
gtgttggttgtttgttctgaagttactgcagtgacattccgtggtcctagtgatactcatttggacagtcttgttggacaagcactctttggagatggag |
1482560 |
T |
|
| Q |
101 |
ctgctgctctgattgttggttctgacccagtaccagaaattgagaaacctatatttgagatggtttggactgcacaaacaattgctcctgatagtgaagg |
200 |
Q |
| |
|
||||||| || |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| || |
|
|
| T |
1482561 |
ctgctgcactcattgttggttctgacccaataccagaaattgagaaacctatatttgagatggtttggactgcacaaacaattgctccagacagtgaggg |
1482660 |
T |
|
| Q |
201 |
agccattgatggtcaccttcgtgaagctggactaacatttcaccttcttaaagatgttcctgggattgtttcaaagaacattactaaagcattg |
294 |
Q |
| |
|
|||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
1482661 |
ggccattgacggtcatcttcgtgaagctggtctaacatttcaccttcttaaagatgttcctgggattgtttcaaagaacattgataaagcattg |
1482754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 305
Target Start/End: Original strand, 1505245 - 1505549
Alignment:
| Q |
1 |
gtgttggttgtttgttctgaagtcaccgctgtcacattccgtggccccagtgatactcacttggacagccttgttgggcaagcactgtttggagatggag |
100 |
Q |
| |
|
||||||||||| ||||| |||||||| || |||||||| || ||||| ||||||||||||||||||||||||||||| ||||| || ||||||||||||| |
|
|
| T |
1505245 |
gtgttggttgtctgttccgaagtcactgcagtcacatttcgcggccctagtgatactcacttggacagccttgttggacaagctctatttggagatggag |
1505344 |
T |
|
| Q |
101 |
ctgctgctctgattgttggttctgacccagtaccagaaattgagaaacctatatttgagatggtttggactgcacaaacaattgctcctgatagtgaagg |
200 |
Q |
| |
|
||||||| || ||||||||||| || ||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| || |||||||| ||||| |
|
|
| T |
1505345 |
ctgctgcactaattgttggttcagatccaataccagaaattgagaaacctatatttgaaatggtttggactgcacaaacaatcgcgcctgatagcgaagg |
1505444 |
T |
|
| Q |
201 |
agccattgatggtcaccttcgtgaagctggactaacatttcaccttcttaaagatgttcctgggattgtttcaaagaacattactaaagcattggttgac |
300 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | ||||||||||||||| |
|
|
| T |
1505445 |
agccattgacggtcaccttcgtgaagctggactaacatttcaccttcttaaagatgttcctgaaattgtttcaaagaacatcaataaagcattggttgat |
1505544 |
T |
|
| Q |
301 |
gcttt |
305 |
Q |
| |
|
||||| |
|
|
| T |
1505545 |
gcttt |
1505549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 320
Target Start/End: Original strand, 1492436 - 1492755
Alignment:
| Q |
1 |
gtgttggttgtttgttctgaagtcaccgctgtcacattccgtggccccagtgatactcacttggacagccttgttgggcaagcactgtttggagatggag |
100 |
Q |
| |
|
||||| |||||||||||||||||||| || |||||||| ||||| ||||||||||| ||||||||||| |||||||| |||||||| ||||||||||||| |
|
|
| T |
1492436 |
gtgttagttgtttgttctgaagtcactgcagtcacatttcgtggtcccagtgatacacacttggacagtcttgttggacaagcactatttggagatggag |
1492535 |
T |
|
| Q |
101 |
ctgctgctctgattgttggttctgacccagtaccagaaattgagaaacctatatttgagatggtttggactgcacaaacaattgctcctgatagtgaagg |
200 |
Q |
| |
|
| ||||| || |||||||| ||||| || |||||||||||||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
1492536 |
cagctgcacttattgttgggtctgatccggtaccagaaattgaaaaacctatatttgagatgatttggacagcacaaacaattgctcctgatagtgaagg |
1492635 |
T |
|
| Q |
201 |
agccattgatggtcaccttcgtgaagctggactaacatttcaccttcttaaagatgttcctgggattgtttcaaagaacattactaaagcattggttgac |
300 |
Q |
| |
|
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| || || | ||||||||| ||||| |
|
|
| T |
1492636 |
tgccattgatggtcatcttcgtgaagctgggttaacatttcaccttcttaaagatgttcctgggattgtgtcaaaaaatataaataaagcattagttgag |
1492735 |
T |
|
| Q |
301 |
gcttttgagccattgggaat |
320 |
Q |
| |
|
||||| | ||||||||||| |
|
|
| T |
1492736 |
gctttccaaccattgggaat |
1492755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 1509392 - 1509648
Alignment:
| Q |
1 |
gtgttggttgtttgttctgaagtcaccgctgtcacattccgtggccccagtgatactcacttggacagccttgttgggcaagcactgtttggagatggag |
100 |
Q |
| |
|
|||||||||||||||||| |||||| || |||||||| ||||||| |||||||||| |||||||| |||||||| |||||| | ||||||||||||| |
|
|
| T |
1509392 |
gtgttggttgtttgttctaaagtcattgcagtcacattttgtggccctggtgatactcatttggacagtcttgttggacaagcattatttggagatggag |
1509491 |
T |
|
| Q |
101 |
ctgctgctctgattgttggttctgacccagtaccagaaattgagaaacctatatttgagatggtttggactgcacaaacaattgctcctgatagtgaagg |
200 |
Q |
| |
|
||||||| || ||||||||| ||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
1509492 |
ctgctgcactcattgttggtactgaccctgtaccagaaattgagaaatctatatttgagatggtttggactgcacaaacaattgctccaaatagtgaagg |
1509591 |
T |
|
| Q |
201 |
agccattgatggtcaccttcgtgaagctggactaacatttcaccttcttaaagatgt |
257 |
Q |
| |
|
|||||||| |||||||||||||||| |||||||||||||| |||||||||||||| |
|
|
| T |
1509592 |
tgccattgacggtcaccttcgtgaagttggactaacatttcgtcttcttaaagatgt |
1509648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 1499508 - 1499745
Alignment:
| Q |
1 |
gtgttggttgtttgttctgaagtcaccgctgtcacattccgtggccccagtgatactcacttggacagccttgttgggcaagcactgtttggagatggag |
100 |
Q |
| |
|
||||||||||||||||||||| |||| || || |||| |||| || ||| |||||||| | ||| |||||||| |||||| | ||||||||||||| |
|
|
| T |
1499508 |
gtgttggttgtttgttctgaaatcactgcaatctcattttgtggacctagtaatactcacctacacaaacttgttggacaagcaatatttggagatggag |
1499607 |
T |
|
| Q |
101 |
ctgctgctctgattgttggttctgacccagtaccagaaattgagaaacctatatttgagatggtttggactgcacaaacaattgctcctgatagtgaagg |
200 |
Q |
| |
|
|||| || | |||||||| ||||||| |||||| ||||||||||||||| |||||||| | |||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
1499608 |
ctgcggcagtcattgttggctctgacctagtacctgaaattgagaaacctttatttgagttagtttggactgcacaaacaattgcttctgatagtgaagg |
1499707 |
T |
|
| Q |
201 |
agccattgatggtcaccttcgtgaagctggactaacat |
238 |
Q |
| |
|
||| ||| |||||| |||||||||| ||| ||||||| |
|
|
| T |
1499708 |
agctatttgtggtcaacttcgtgaagttgggctaacat |
1499745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 69 - 281
Target Start/End: Original strand, 1487006 - 1487218
Alignment:
| Q |
69 |
ccttgttgggcaagcactgtttggagatggagctgctgctctgattgttggttctgacccagtaccagaaattgagaaacctatatttgagatggtttgg |
168 |
Q |
| |
|
||||||||| |||||| | ||||| |||||||||| || | |||||||| || || || || || |||||||||||||| | |||||| | |||||| |
|
|
| T |
1487006 |
ccttgttggacaagcattatttggtgatggagctgttgtagtcattgttggctccgatccgatatcaaaaattgagaaacctctctttgagcttgtttgg |
1487105 |
T |
|
| Q |
169 |
actgcacaaacaattgctcctgatagtgaaggagccattgatggtcaccttcgtgaagctggactaacatttcaccttcttaaagatgttcctgggattg |
268 |
Q |
| |
|
|||||||||||||| |||| |||||||||| ||| ||| || || |||||||||| ||||||||||||| | |||| ||||||||| |||| ||| |
|
|
| T |
1487106 |
actgcacaaacaatagctctagatagtgaagaagcaattagcggccaacttcgtgaagttggactaacatttaatcttcgtaaagatgtccctgaaatta |
1487205 |
T |
|
| Q |
269 |
tttcaaagaacat |
281 |
Q |
| |
|
| ||||||||||| |
|
|
| T |
1487206 |
tctcaaagaacat |
1487218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 299
Target Start/End: Complemental strand, 24163644 - 24163346
Alignment:
| Q |
1 |
gtgttggttgtttgttctgaagtcaccgctgtcacattccgtggccccagtgatactcacttggacagccttgttgggcaagcactgtttggagatggag |
100 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||||||| |||| || || ||||||||||| |||| ||||||||| ||||| || ||||||||||||| |
|
|
| T |
24163644 |
gtgttggttgtttgttctgaagttaccgcaatcacattttgtggaccaagcgatactcacttagacaaccttgttggacaagctctatttggagatggag |
24163545 |
T |
|
| Q |
101 |
ctgctgctctgattgttggttctgacccagtaccagaaattgagaaacctatatttgagatggtttggactgcacaaacaattgctcctgatagtgaagg |
200 |
Q |
| |
|
||||||| | |||||||| ||||||||| ||| ||||||||||||||| |||||||| | |||||||| ||||||||||| ||||| |||||||||| |
|
|
| T |
24163544 |
ctgctgcagtcattgttggctctgacccaatacaggaaattgagaaacctctatttgagttagtttggacagcacaaacaatcgctccaaatagtgaagg |
24163445 |
T |
|
| Q |
201 |
agccattgatggtcaccttcgtgaagctggactaacatttcaccttcttaaagatgttcctgggattgtttcaaagaacattactaaagcattggttga |
299 |
Q |
| |
|
||| ||| ||| || ||||||||| ||| ||| ||||||| ||| ||| |||||||| | ||||| |||||||| ||| |||||||||| |||| |
|
|
| T |
24163444 |
agctatttgtggccaacttcgtgaatttgggctatcatttcatctttgtaaggatgttccagacattgtctcaaagaatattgataaagcattgtttga |
24163346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 87; Significance: 1e-41; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 4 - 282
Target Start/End: Complemental strand, 37863241 - 37862963
Alignment:
| Q |
4 |
ttggttgtttgttctgaagtcaccgctgtcacattccgtggccccagtgatactcacttggacagccttgttgggcaagcactgtttggagatggagctg |
103 |
Q |
| |
|
||||| |||||||| || |||| || || || |||||||| || ||||||||||| | || || ||||| ||||| ||| ||||||||||||| || | |
|
|
| T |
37863241 |
ttggtggtttgttcggagatcactgcagttactttccgtggacctagtgatactcatcttgatagtcttgtggggcaggcattgtttggagatggtgcag |
37863142 |
T |
|
| Q |
104 |
ctgctctgattgttggttctgacccagtaccagaaattgagaaacctatatttgagatggtttggactgcacaaacaattgctcctgatagtgaaggagc |
203 |
Q |
| |
|
| ||| ||||||||||||| || || | |||||| ||||||| ||| | ||||| |||||||||||||||||||||| | ||| |||||||||||||| |
|
|
| T |
37863141 |
cagctgtgattgttggttcagatccgttgccagaagttgagaagcctttgtttgaattggtttggactgcacaaacaatcgttccagatagtgaaggagc |
37863042 |
T |
|
| Q |
204 |
cattgatggtcaccttcgtgaagctggactaacatttcaccttcttaaagatgttcctgggattgtttcaaagaacatt |
282 |
Q |
| |
|
||||||||||||||||| ||||| ||||| ||||| || || || || ||||||||||| |||| |||||||||||| |
|
|
| T |
37863041 |
tattgatggtcaccttcgagaagcaggactgacattccatctcctcaaggatgttcctggccttgtctcaaagaacatt |
37862963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 37 - 282
Target Start/End: Complemental strand, 37859182 - 37858937
Alignment:
| Q |
37 |
ttccgtggccccagtgatactcacttggacagccttgttgggcaagcactgtttggagatggagctgctgctctgattgttggttctgacccagtaccag |
136 |
Q |
| |
|
|||||||| |||||||| ||||| | || |||||||| ||||||||| ||||||||||||| || || ||| |||| || ||||| |||||| ||||| |
|
|
| T |
37859182 |
ttccgtggacccagtgacactcatcttgatagccttgtggggcaagcattgtttggagatggtgcagcagctgtgatcgtaggttcagacccattaccac |
37859083 |
T |
|
| Q |
137 |
aaattgagaaacctatatttgagatggtttggactgcacaaacaattgctcctgatagtgaaggagccattgatggtcaccttcgtgaagctggactaac |
236 |
Q |
| |
|
|| |||||||||| | ||||| |||| |||||||||||||| || ||| |||||||||||||| ||||| |||||||||||||||| || || || |
|
|
| T |
37859082 |
aagttgagaaacccttgtttgaattggtatggactgcacaaacgatccttccagatagtgaaggagcaattgacggtcaccttcgtgaagtcgggcttac |
37858983 |
T |
|
| Q |
237 |
atttcaccttcttaaagatgttcctgggattgtttcaaagaacatt |
282 |
Q |
| |
|
||| || || || || ||||||||||| || | |||||||||||| |
|
|
| T |
37858982 |
attccatctcctcaaggatgttcctggtcttatctcaaagaacatt |
37858937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 86 - 203
Target Start/End: Original strand, 39030424 - 39030541
Alignment:
| Q |
86 |
tgtttggagatggagctgctgctctgattgttggttctgacccagtaccagaaattgagaaacctatatttgagatggtttggactgcacaaacaattgc |
185 |
Q |
| |
|
||||||||||||| || || ||| ||||||||||||| ||||| | |||||| ||||||| ||| | ||||| |||| |||||||||||||| || |
|
|
| T |
39030424 |
tgtttggagatggtgcggcagctgtgattgttggttcagacccgttgccagaagttgagaagcctttgtttgaattggtatggactgcacaaaccatcat |
39030523 |
T |
|
| Q |
186 |
tcctgatagtgaaggagc |
203 |
Q |
| |
|
||| |||||||||||||| |
|
|
| T |
39030524 |
tccagatagtgaaggagc |
39030541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 101 - 257
Target Start/End: Original strand, 35251186 - 35251342
Alignment:
| Q |
101 |
ctgctgctctgattgttggttctgacccagtaccagaaattgagaaacctatatttgagatggtttggactgcacaaacaattgctcctgatagtgaagg |
200 |
Q |
| |
|
|||| ||| |||| |||||||| || ||| |||| || |||||| |||| | |||||| | | ||||||||||||||||| |||||||||| |||| |
|
|
| T |
35251186 |
ctgcagctgtgatcgttggttcagatccattacctgaggttgagagacctttgtttgagctagagtggactgcacaaacaatccttcctgatagtcaagg |
35251285 |
T |
|
| Q |
201 |
agccattgatggtcaccttcgtgaagctggactaacatttcaccttcttaaagatgt |
257 |
Q |
| |
|
||| |||||||||||||||||||| | |||||||||||| || ||||| || ||||| |
|
|
| T |
35251286 |
agctattgatggtcaccttcgtgaggttggactaacattccatcttctcaaggatgt |
35251342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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