View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10562_low_5 (Length: 282)
Name: NF10562_low_5
Description: NF10562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10562_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 18 - 272
Target Start/End: Complemental strand, 47254 - 47000
Alignment:
| Q |
18 |
cttccatatttgaagacacgtcttgatcagatagactcctcagaacaatacaaactcttatagtatcattctatttcaagaagagaccatctcaattgag |
117 |
Q |
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| T |
47254 |
cttccatatttgaagacacgtcttgatcagatagactcctcagaacaatacaaactcttatagtatcattctatttcaagaagagaccatctcaattgag |
47155 |
T |
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| Q |
118 |
gtttcaatgagatttaatttgtaatcatactattacttagtaaactactcttcaaagtcacgatcaatattcatagttatctaatatctagtgtattcta |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47154 |
gtttcaatgagatttaatttgtaatcatactattacttagtaaactactcttcaaagtcacgatcaatattcatagttatctaatatctagtgtattcta |
47055 |
T |
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| Q |
218 |
tttgggaaccaagtgtggttcccaaagtaaacaaccaagtgtggttctgttcttc |
272 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
47054 |
tttgggaaccaagtgtggttcccaaagtaaacaaccaagtgtggttctcttcttc |
47000 |
T |
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