View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10562_low_7 (Length: 253)
Name: NF10562_low_7
Description: NF10562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10562_low_7 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 15 - 244
Target Start/End: Original strand, 36936754 - 36936983
Alignment:
| Q |
15 |
aatatcaaggcaagagttcaatctgcattgaatattaaacttgttcttaaaatctaaagccataaactcttcaaacaacaaactacaactccctactata |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36936754 |
aatatcaaggcaagagttcaatctgcattgaatattaaacttgttcttaaaatctaaagccataaactcttcaaacaacaaactacaactccctactata |
36936853 |
T |
|
| Q |
115 |
tatgtccatcacctatattctgagtttgttttaagtcatcttaagcacgagttgagaagctttttaagctaagagattaatcttcaagcataatgcactt |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |
|
|
| T |
36936854 |
tatgtccatcacctatattctgagtttgttttaagtcatcttaagcacgagttgagaagctttttaagctaagaaattaatcttcaagcataatacactt |
36936953 |
T |
|
| Q |
215 |
ttaggtgaaaatatcgtaatctcttcatct |
244 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
36936954 |
ttaggtgaaaatatcgtaatctcttcatct |
36936983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 29 - 144
Target Start/End: Original strand, 34399554 - 34399672
Alignment:
| Q |
29 |
agttcaatctgcattgaatattaaacttgttcttaaaatctaaagccataaactcttcaaac-aacaaactacaactccctac--tatatatgtccatca |
125 |
Q |
| |
|
|||||||||| |||||||| | |||||||||| || | || ||| |||||||||||||||| ||||| |||||||||||| | ||||||||||||||| |
|
|
| T |
34399554 |
agttcaatctaaattgaataatcaacttgttctaaatagctcaagtcataaactcttcaaaccaacaagctacaactccctgcattatatatgtccatca |
34399653 |
T |
|
| Q |
126 |
cctatattctgagtttgtt |
144 |
Q |
| |
|
|||||||| |||||||||| |
|
|
| T |
34399654 |
cctatattatgagtttgtt |
34399672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 152 - 244
Target Start/End: Complemental strand, 7784480 - 7784389
Alignment:
| Q |
152 |
atcttaagcacgagttgagaagctttttaagctaagagattaatcttcaagcataatgcacttttaggtgaaaatatcgtaatctcttcatct |
244 |
Q |
| |
|
||||||| || |||||||||||| ||| | ||||||||||| || || || |||||| |||||||| ||| ||||||| |||||||||||||| |
|
|
| T |
7784480 |
atcttaaacatgagttgagaagcctttgaggctaagagattgatttt-aaccataatccacttttaagtgcaaatatcataatctcttcatct |
7784389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 136 - 215
Target Start/End: Original strand, 1349665 - 1349745
Alignment:
| Q |
136 |
gagtttgttttaagtcatcttaagcacgagttgagaagctttttaagct-aagagattaatcttcaagcataatgcacttt |
215 |
Q |
| |
|
|||||||| ||||||||||| || ||||||||||||||| || ||||| |||||||| |||||||| |||||| |||||| |
|
|
| T |
1349665 |
gagtttgtcttaagtcatctcaaacacgagttgagaagccattaaagctaaagagattgatcttcaatcataatccacttt |
1349745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 1349555 - 1349603
Alignment:
| Q |
18 |
atcaaggcaagagttcaatctgcattgaatattaaacttgttcttaaaa |
66 |
Q |
| |
|
||||| ||||||||| ||||| ||||||||||| |||||||||| |||| |
|
|
| T |
1349555 |
atcaaagcaagagtttaatctacattgaatattcaacttgttctaaaaa |
1349603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 163 - 244
Target Start/End: Complemental strand, 24096512 - 24096432
Alignment:
| Q |
163 |
gagttgagaagctttttaagctaagagattaatcttcaagcataatgcacttttaggtgaaaatatcgtaatctcttcatct |
244 |
Q |
| |
|
|||||||||||| ||| | |||||||||||||| || || |||||| |||||||| ||| ||||||| |||||||| |||| |
|
|
| T |
24096512 |
gagttgagaagcctttgaggctaagagattaat-tttaaccataatccacttttacgtgcaaatatcacaatctcttaatct |
24096432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 163 - 244
Target Start/End: Complemental strand, 5378886 - 5378806
Alignment:
| Q |
163 |
gagttgagaagctttttaagctaagagattaatcttcaagcataatgcacttttaggtgaaaatatcgtaatctcttcatct |
244 |
Q |
| |
|
|||||||||||| ||| | |||| |||||| || || || |||||| |||||||| ||| ||||||| |||||||||||||| |
|
|
| T |
5378886 |
gagttgagaagcctttgaggctatgagattgatttt-aaccataatccacttttaagtgcaaatatcataatctcttcatct |
5378806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University