View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10563_high_2 (Length: 207)
Name: NF10563_high_2
Description: NF10563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10563_high_2 |
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| [»] scaffold0215 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 118; Significance: 2e-60; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 3396977 - 3396840
Alignment:
| Q |
1 |
attggcccttcgaagggccaatattttttcaataaaaaatatattggtcgaccttcgaaccttgaaaattttatattagcactctcttcttctaatacat |
100 |
Q |
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||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
3396977 |
attggcccttcaaagggccaatattttttcgataaaaaatatattggtcgaccttcgaacgttgaaaattttatattagcactctcttcttctaatacat |
3396878 |
T |
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| Q |
101 |
cctaataagttagttacttcatttttaaaaatattttg |
138 |
Q |
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| T |
3396877 |
cctaataagttacttacttcttttttaaaaatattttg |
3396840 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 134 - 194
Target Start/End: Complemental strand, 14710442 - 14710382
Alignment:
| Q |
134 |
ttttggataaatgcaacaatgtaaaaaaccctctaatataagaagactaagttttctttct |
194 |
Q |
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| T |
14710442 |
ttttggataattgcaacaatgtaaaaaactctctaatataagaagattaatttttttttct |
14710382 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 5e-18; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 134 - 188
Target Start/End: Original strand, 18394537 - 18394591
Alignment:
| Q |
134 |
ttttggataaatgcaacaatgtaaaaaaccctctaatataagaagactaagtttt |
188 |
Q |
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| T |
18394537 |
ttttgaataaatgcaacaatgtaaaaagccctctaatataagaagactaagtttt |
18394591 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 134 - 188
Target Start/End: Original strand, 3372919 - 3372974
Alignment:
| Q |
134 |
ttttggataaatgcaacaatgtaaaa-aaccctctaatataagaagactaagtttt |
188 |
Q |
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| T |
3372919 |
ttttgtataattgcaacaatgtaaaaaaaccctctaatttaagaagactaagtttt |
3372974 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 134 - 181
Target Start/End: Complemental strand, 21183998 - 21183951
Alignment:
| Q |
134 |
ttttggataaatgcaacaatgtaaaaaaccctctaatataagaagact |
181 |
Q |
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| T |
21183998 |
ttttggataaatgcaacgatgtaaaaaaccctctaatataagaagact |
21183951 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0215 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0215
Description:
Target: scaffold0215; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 134 - 188
Target Start/End: Original strand, 25577 - 25631
Alignment:
| Q |
134 |
ttttggataaatgcaacaatgtaaaaaaccctctaatataagaagactaagtttt |
188 |
Q |
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||||| |||| |||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
25577 |
ttttgtataattgcaacaatgtaaaaaaccctctaatttaagaagactaagtttt |
25631 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 134 - 194
Target Start/End: Original strand, 29909829 - 29909889
Alignment:
| Q |
134 |
ttttggataaatgcaacaatgtaaaaaaccctctaatataagaagactaagttttctttct |
194 |
Q |
| |
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|||||||||| |||||||||||||||||| |||||||||||||||| ||| |||| ||||| |
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| T |
29909829 |
ttttggataattgcaacaatgtaaaaaactctctaatataagaagattaatttttttttct |
29909889 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 134 - 188
Target Start/End: Original strand, 16359579 - 16359633
Alignment:
| Q |
134 |
ttttggataaatgcaacaatgtaaaaaaccctctaatataagaagactaagtttt |
188 |
Q |
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||||| |||| ||||||||||||||||||||| |||| ||||||||||||||||| |
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| T |
16359579 |
ttttgtataattgcaacaatgtaaaaaaccctataatttaagaagactaagtttt |
16359633 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 134 - 188
Target Start/End: Complemental strand, 18848879 - 18848824
Alignment:
| Q |
134 |
ttttggataaatgcaacaatgtaaaaaa-ccctctaatataagaagactaagtttt |
188 |
Q |
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||||| |||| ||||||||||||||||| ||||||||| ||||||||||||||||| |
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| T |
18848879 |
ttttgtataattgcaacaatgtaaaaaaaccctctaatttaagaagactaagtttt |
18848824 |
T |
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