View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10563_low_1 (Length: 787)
Name: NF10563_low_1
Description: NF10563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10563_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 357; Significance: 0; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 394 - 777
Target Start/End: Complemental strand, 40489584 - 40489198
Alignment:
| Q |
394 |
ggtgaaggaaattaaaatttgtttcacatgcaagagtctttcttatgagacatacacatctacaacatttaactttacaagtttattat---acaaaaac |
490 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
40489584 |
ggtgaaggaaactaaaatttgtttcacatgcaagagtctttcttatgagacatacacatctacaacatttaactttacaagtttattattatacaaaaac |
40489485 |
T |
|
| Q |
491 |
cccataattggcatcacagctcaggttagaatgacaagaaaatggagaatgtgaaactgatgagttgtgtttgtgaagaattggaaaattgcaacccaca |
590 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
40489484 |
tccataattggcatcacagctcaggttagaacgacaagaaaatggagaatgtgaaactgatgagttgtgtttgtgaacaattggaaaattgcaacccaca |
40489385 |
T |
|
| Q |
591 |
aaacccaaatcatgatcttcagcactttctatctctacaagtgcctcacagaacaagtcaacatcacaaggaagccatagaggaccatcatttctatatc |
690 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40489384 |
aaacccaaatcatgatcttcagcactttctatctctacaagtgcctcacagaacaagtcaacatcacaaggaagccatagaggaccatcatttctatatc |
40489285 |
T |
|
| Q |
691 |
catattcattctcaacatcttctaaaagagttttaaacaaaggatggttgaatattttgatcttgattacgaatctttgtctctctg |
777 |
Q |
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| T |
40489284 |
catattcattctcaacatcttctaaaagagttttaaacaaaggatggttgaatattttgatcttgattacgaatctttgtctctctg |
40489198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 1 - 371
Target Start/End: Original strand, 40489211 - 40489584
Alignment:
| Q |
1 |
attcgtaatcaagatcaaaatattcaaccatcctttgtttaaaactcttttagaagatgttgagaatgaatatggatatagaaatgatggtcctctatgg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40489211 |
attcgtaatcaagatcaaaatattcaaccatcctttgtttaaaactcttttagaagatgttgagaatgaatatggatatagaaatgatggtcctctatgg |
40489310 |
T |
|
| Q |
101 |
cttccttgtgatgttgacttgttctgtgaggcacttgtagagatagaaagtgctgaagatcatgatttgggttttgtgggttgcaattttccaattcttc |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
40489311 |
cttccttgtgatgttgacttgttctgtgaggcacttgtagagatagaaagtgctgaagatcatgatttgggttttgtgggttgcaattttccaattgttc |
40489410 |
T |
|
| Q |
201 |
acaaacacaactcatcagtttcacattctccattttcttgtcattctaacctgagctgtgatgccaattatggggtttttgt---ataataaacttgtaa |
297 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |
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| T |
40489411 |
acaaacacaactcatcagtttcacattctccattttcttgtcgttctaacctgagctgtgatgccaattatggagtttttgtataataataaacttgtaa |
40489510 |
T |
|
| Q |
298 |
agttaaatgttgtagatgtgtatgtctcataagaaagactcttgcatgtgaaacaaattttaatttccttcacc |
371 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
40489511 |
agttaaatgttgtagatgtgtatgtctcataagaaagactcttgcatgtgaaacaaattttagtttccttcacc |
40489584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 220; E-Value: 1e-120
Query Start/End: Original strand, 554 - 777
Target Start/End: Complemental strand, 40466439 - 40466216
Alignment:
| Q |
554 |
gttgtgtttgtgaagaattggaaaattgcaacccacaaaacccaaatcatgatcttcagcactttctatctctacaagtgcctcacagaacaagtcaaca |
653 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40466439 |
gttgtgtttgtgaacaattggaaaattgcaacccacaaaacccaaatcatgatcttcagcactttctatctctacaagtgcctcacagaacaagtcaaca |
40466340 |
T |
|
| Q |
654 |
tcacaaggaagccatagaggaccatcatttctatatccatattcattctcaacatcttctaaaagagttttaaacaaaggatggttgaatattttgatct |
753 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40466339 |
tcacaaggaagccatagaggaccatcatttctatatccatattcattctcaacatcttctaaaagagttttaaacaaaggatggttgaatattttgatct |
40466240 |
T |
|
| Q |
754 |
tgattacgaatctttgtctctctg |
777 |
Q |
| |
|
|||||||||||||||||||||||| |
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| T |
40466239 |
tgattacgaatctttgtctctctg |
40466216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 40466229 - 40466439
Alignment:
| Q |
1 |
attcgtaatcaagatcaaaatattcaaccatcctttgtttaaaactcttttagaagatgttgagaatgaatatggatatagaaatgatggtcctctatgg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40466229 |
attcgtaatcaagatcaaaatattcaaccatcctttgtttaaaactcttttagaagatgttgagaatgaatatggatatagaaatgatggtcctctatgg |
40466328 |
T |
|
| Q |
101 |
cttccttgtgatgttgacttgttctgtgaggcacttgtagagatagaaagtgctgaagatcatgatttgggttttgtgggttgcaattttccaattcttc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
40466329 |
cttccttgtgatgttgacttgttctgtgaggcacttgtagagatagaaagtgctgaagatcatgatttgggttttgtgggttgcaattttccaattgttc |
40466428 |
T |
|
| Q |
201 |
acaaacacaac |
211 |
Q |
| |
|
||||||||||| |
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| T |
40466429 |
acaaacacaac |
40466439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 108; E-Value: 8e-54
Query Start/End: Original strand, 618 - 777
Target Start/End: Complemental strand, 40472711 - 40472552
Alignment:
| Q |
618 |
tctatctctacaagtgcctcacagaacaagtcaacatcacaaggaagccatagaggaccatcatttctatatccatattcattctcaacatcttctaaaa |
717 |
Q |
| |
|
||||| ||||||||| |||||| || || ||||| |||||||||| ||||||||||||||| ||||||||||||||||| |||||||||||||| |||| |
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| T |
40472711 |
tctatatctacaagtatctcacaaaataaatcaacgtcacaaggaaaccatagaggaccatcgtttctatatccatattcgttctcaacatcttccaaaa |
40472612 |
T |
|
| Q |
718 |
gagttttaaacaaaggatggttgaatattttgatcttgattacgaatctttgtctctctg |
777 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
40472611 |
gagttttgaacaaaggatggttgaatattttgatcttgattatgaatctttgtctctctg |
40472552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 95; E-Value: 5e-46
Query Start/End: Original strand, 1 - 147
Target Start/End: Original strand, 40472565 - 40472711
Alignment:
| Q |
1 |
attcgtaatcaagatcaaaatattcaaccatcctttgtttaaaactcttttagaagatgttgagaatgaatatggatatagaaatgatggtcctctatgg |
100 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||| |
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| T |
40472565 |
attcataatcaagatcaaaatattcaaccatcctttgttcaaaactcttttggaagatgttgagaacgaatatggatatagaaacgatggtcctctatgg |
40472664 |
T |
|
| Q |
101 |
cttccttgtgatgttgacttgttctgtgaggcacttgtagagataga |
147 |
Q |
| |
|
|||||||||| ||||| || || |||||| ||||||||| ||||| |
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|
| T |
40472665 |
tttccttgtgacgttgatttattttgtgagatacttgtagatataga |
40472711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 38 - 117
Target Start/End: Original strand, 40480377 - 40480456
Alignment:
| Q |
38 |
tttaaaactcttttagaagatgttgagaatgaatatggatatagaaatgatggtcctctatggcttccttgtgatgttga |
117 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||| || ||||||||||||||||||||||||||| ||||| |
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|
| T |
40480377 |
tttaaaactcttttagaagatgttgacaatgaatatggatataaaagtgatggtcctctatggcttccttgtgacgttga |
40480456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 648 - 727
Target Start/End: Complemental strand, 40480456 - 40480377
Alignment:
| Q |
648 |
tcaacatcacaaggaagccatagaggaccatcatttctatatccatattcattctcaacatcttctaaaagagttttaaa |
727 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| || |||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
40480456 |
tcaacgtcacaaggaagccatagaggaccatcacttttatatccatattcattgtcaacatcttctaaaagagttttaaa |
40480377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 9 - 68
Target Start/End: Original strand, 7624788 - 7624847
Alignment:
| Q |
9 |
tcaagatcaaaatattcaaccatcctttgtttaaaactcttttagaagatgttgagaatg |
68 |
Q |
| |
|
||||||||| ||||||||| || |||||||||||||||||||||| || ||||||||||| |
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|
| T |
7624788 |
tcaagatcagaatattcaatcaccctttgtttaaaactcttttaggagctgttgagaatg |
7624847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 697 - 756
Target Start/End: Complemental strand, 7624847 - 7624788
Alignment:
| Q |
697 |
cattctcaacatcttctaaaagagttttaaacaaaggatggttgaatattttgatcttga |
756 |
Q |
| |
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||||||||||| || |||||||||||||||||||||| || ||||||||| ||||||||| |
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|
| T |
7624847 |
cattctcaacagctcctaaaagagttttaaacaaagggtgattgaatattctgatcttga |
7624788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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