View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10563_low_2 (Length: 431)
Name: NF10563_low_2
Description: NF10563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10563_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 27 - 414
Target Start/End: Complemental strand, 3309072 - 3308686
Alignment:
| Q |
27 |
actttcacttttgactttaagctttgtttaacatcattaacgtgctaatacatatacagaaaatatatcaattaagatgattgttaat-gtcagagataa |
125 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| |||||||||||||| ||||||||||| |
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| T |
3309072 |
actttcacttttgactttaagctttgtttaacatcgttaacgtgctaatacatatatagaaaatatatcaattgagatgattgttaatcgtcagagataa |
3308973 |
T |
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| Q |
126 |
atgatagataccagatactaaagttgtttaatttgtgatttatgatttgctcgtcggagtgtatacataaaaaacatatgctagtttgagtttggatact |
225 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||| || || |||||||||||||||||||||||||| |||||||||||||||| |
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| T |
3308972 |
atgatagataccagatactaaagttgtttaatctgtgatttatgatttgatcttcacagtgtatacataaaaaacatatgctactttgagtttggatact |
3308873 |
T |
|
| Q |
226 |
caaactaannnnnnnnnnnnnnnnatatactccaaaacggcatcgttttgttaccttaacgtctacgtagttggaatccatgctttacaactttgctttt |
325 |
Q |
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|| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3308872 |
ca--ctaattttttaattttttttatatactccaaaacggcatcgttttgttaccttaacgtctacgtagttggaatccatgctttacaactttgctttt |
3308775 |
T |
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| Q |
326 |
ctactttgatacacctagaaagttcatattctctctccttttccaagcaataacattctccactaatacggcatcgtttcattgccttg |
414 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3308774 |
ctactttgatacacctagaaagttcatattctctctccttttccaagcaataacattctccactaatacggcatcgtttcattgccttg |
3308686 |
T |
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