View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10563_low_3 (Length: 374)
Name: NF10563_low_3
Description: NF10563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10563_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 289; Significance: 1e-162; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 19 - 361
Target Start/End: Complemental strand, 31188957 - 31188614
Alignment:
| Q |
19 |
ttaaatcctttagaagttggttgctgcgtatgctacgaatggagaacaagctatactagaaaatgattttatcttatgtggaagtaactagtaagccgtg |
118 |
Q |
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||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
31188957 |
ttaaatcatttagaagttggttgctgcgtatgctacaaatggagaacaagctatactagaaaatgattttatcttatgtggaagtaactagtaagtcgtg |
31188858 |
T |
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| Q |
119 |
attaagtcataaccttaatatgtgtaatgaaaatattaggtatatgattaaaatattcatattctccaaaaataatagcatcgaa-nnnnnnnnnaggtg |
217 |
Q |
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| T |
31188857 |
attaagtcatatccttaatatgtgtaatgaaaatattaggtatatgattaaaatattcatattctccaaaaataatagcatcgaattttttttttaggtg |
31188758 |
T |
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| Q |
218 |
atctaatattttaacttgtctactattatatatgtgatgcccctcttcttttggtgctttgcattggcagtttttgtgatgtttttgtttctgtttcggt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31188757 |
atctaatattttaacttgtctactattatatatgtgatgcccctcttcttttggtgctttgcattggcagtttttgtgatgtttttgtttctgtttcggt |
31188658 |
T |
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| Q |
318 |
gctgccttgcatattctttttgtgcttcatgtttctgtgctcct |
361 |
Q |
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| T |
31188657 |
gctgccttgcatattctttttgtgcttcatgtttctgtgttcct |
31188614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 19 - 337
Target Start/End: Complemental strand, 31200764 - 31200445
Alignment:
| Q |
19 |
ttaaatcctttagaagttggttgctgcgtatgctacgaatggagaacaagctatactagaaaatgattttatcttatgtggaagtaactagtaagccgtg |
118 |
Q |
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||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
31200764 |
ttaaatcatttagaagttggttgctgcgtatgctacaaatggagaacaagctatactagaaaatgattttatcttatgtggaagtaactagtaagtcgtg |
31200665 |
T |
|
| Q |
119 |
attaagtcataaccttaatatgtgtaatgaaaatattaggtatatgattaaaatattcatattctccaaaaataatagcatcgaa-nnnnnnnnnaggtg |
217 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
31200664 |
attaagtcatatccttaatatgtgtaatgaaaatattaggtatatgattaaaatattcatattctccaaaaataatagcatcgaattttttttttaggtg |
31200565 |
T |
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| Q |
218 |
atctaatattttaacttgtctactattatatatgtgatgcccctcttcttttggtgctttgcattggcagtttttgtgatgtttttgtttctgtttcggt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31200564 |
atctaatattttaacttgtctactattatatatgtgatgcccctcttcttttggtgctttgcattggcagtttttgtgatgtttttgtttctgtttcggt |
31200465 |
T |
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| Q |
318 |
gctgccttgcatattctttt |
337 |
Q |
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|||||||||||||||||||| |
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| T |
31200464 |
gctgccttgcatattctttt |
31200445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 47 - 121
Target Start/End: Complemental strand, 31170982 - 31170908
Alignment:
| Q |
47 |
tatgctacgaatggagaacaagctatactagaaaatgattttatcttatgtggaagtaactagtaagccgtgatt |
121 |
Q |
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| T |
31170982 |
tatgctacaaatggagaacaagctatactagaaaatgtttttattttatgtggaagtcactagaaagccgtgatt |
31170908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 12 - 104
Target Start/End: Complemental strand, 31144861 - 31144770
Alignment:
| Q |
12 |
atcatcattaaatcctttagaagttggttgctgcgtatgctacgaatggagaacaagctatactagaaaatgattttatcttatgtggaagta |
104 |
Q |
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|||||| ||| | |||||||||||| |||||||| |||||||| ||||||||||| | ||||||||||||| ||||||||||| |||||||| |
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| T |
31144861 |
atcatctttataacctttagaagtttgttgctgcatatgctac-aatggagaacatgttatactagaaaatatttttatcttatttggaagta |
31144770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 111
Target Start/End: Original strand, 31225191 - 31225277
Alignment:
| Q |
23 |
atcctttagaagttggttgctgcgtatgctacgaatggagaacaagctatactagaaaatgattttatcttatgtggaagtaactagta |
111 |
Q |
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|||||||| ||||||| |||| || ||||| |||| | |||||||||||||| |||| | ||||||||||||||||| |||||||| |
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| T |
31225191 |
atcctttataagttggcgactgcataagctacaaatgaaaaacaagctatactacaaaaag--tttatcttatgtggaagcaactagta |
31225277 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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