View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10563_low_5 (Length: 250)
Name: NF10563_low_5
Description: NF10563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10563_low_5 |
 | |
|
| [»] scaffold0011 (2 HSPs) |
| | |
|
| [»] scaffold0018 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0011 (Bit Score: 142; Significance: 1e-74; HSPs: 2)
Name: scaffold0011
Description:
Target: scaffold0011; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 3 - 240
Target Start/End: Original strand, 137740 - 137977
Alignment:
| Q |
3 |
gatggaatgcttcgacatcctgcagattctcctcaatgggaaaaaattgatcatgattaccaagattttgggaaagaagaaagaaatctacgtcttgcat |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||| |||| ||| |||||||||||||||| |||||| ||||||||||||| |
|
|
| T |
137740 |
gatggaatgcttcgacatcctgcagattctcctcaatgggccaaaattgataatgactactcagattttgggaaagaaacaagaaacctacgtcttgcat |
137839 |
T |
|
| Q |
103 |
tgtctactgatggaataaaccctcatggtattcagagtagtaagcacactacttggccggtgattatgatgatttataacctgcctccatggctatatac |
202 |
Q |
| |
|
|||||||||| |||||||||||||||||| |||| ||| ||||||||||||||||||| |||||| || ||||||||||||| ||||||||||||| | |
|
|
| T |
137840 |
tgtctactgacggaataaaccctcatggtcttcaaagtggtaagcacactacttggccagtgattttgctgatttataacctacctccatggctatgcat |
137939 |
T |
|
| Q |
203 |
gaagcgcaagtacatgatgctgacaatgttaatctctg |
240 |
Q |
| |
|
||||||||||| ||||||| |||| |||||||| |||| |
|
|
| T |
137940 |
gaagcgcaagttcatgatgttgactatgttaatttctg |
137977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0011; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 3 - 240
Target Start/End: Original strand, 142964 - 143201
Alignment:
| Q |
3 |
gatggaatgcttcgacatcctgcagattctcctcaatgggaaaaaattgatcatgattaccaagattttgggaaagaagaaagaaatctacgtcttgcat |
102 |
Q |
| |
|
|||||||| |||||||||||| |||||||||||||||||| | ||||||| |||| ||| ||||||||||||||| |||||| ||||||||| ||| |
|
|
| T |
142964 |
gatggaatacttcgacatcctacagattctcctcaatgggccataattgataatgactactcggattttgggaaagaaacaagaaacctacgtcttacat |
143063 |
T |
|
| Q |
103 |
tgtctactgatggaataaaccctcatggtattcagagtagtaagcacactacttggccggtgattatgatgatttataacctgcctccatggctatatac |
202 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| ||| ||||||||||||||||||| |||||| || ||||||||||||| ||||||||||||| | |
|
|
| T |
143064 |
tgtctactgatggaataaaccctcatggtcttcaaagtggtaagcacactacttggccagtgattttgctgatttataacctacctccatggctatgcat |
143163 |
T |
|
| Q |
203 |
gaagcgcaagtacatgatgctgacaatgttaatctctg |
240 |
Q |
| |
|
|||| |||||| ||||||| |||| |||||||| |||| |
|
|
| T |
143164 |
gaagtgcaagttcatgatgttgactatgttaatttctg |
143201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 3 - 240
Target Start/End: Original strand, 20748867 - 20749104
Alignment:
| Q |
3 |
gatggaatgcttcgacatcctgcagattctcctcaatgggaaaaaattgatcatgattaccaagattttgggaaagaagaaagaaatctacgtcttgcat |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||| |||| ||| |||||||||||||||| |||||| ||||||||||||| |
|
|
| T |
20748867 |
gatggaatgcttcgacatcctgcagattctcctcaatgggccaaaattgataatgactactcagattttgggaaagaaacaagaaacctacgtcttgcat |
20748966 |
T |
|
| Q |
103 |
tgtctactgatggaataaaccctcatggtattcagagtagtaagcacactacttggccggtgattatgatgatttataacctgcctccatggctatatac |
202 |
Q |
| |
|
|||||||||| |||||||||||||||||| |||| ||| ||||||||||||||||||| |||||| || ||||||||||||| ||||||||||||| | |
|
|
| T |
20748967 |
tgtctactgacggaataaaccctcatggtcttcaaagtggtaagcacactacttggccagtgattttgctgatttataacctacctccatggctatgcat |
20749066 |
T |
|
| Q |
203 |
gaagcgcaagtacatgatgctgacaatgttaatctctg |
240 |
Q |
| |
|
||||||||||| ||||||| |||| |||||||| |||| |
|
|
| T |
20749067 |
gaagcgcaagttcatgatgttgactatgttaatttctg |
20749104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 102; Significance: 9e-51; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 16726299 - 16726198
Alignment:
| Q |
1 |
cagatggaatgcttcgacatcctgcagattctcctcaatgggaaaaaattgatcatgattaccaagattttgggaaagaagaaagaaatctacgtcttgc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16726299 |
cagatggaatgcttcgacatcctgcagattctcctcaatgggaaaaaattgatcatgattaccaagattttgggaaagaagaaagaaatctacgtcttgc |
16726200 |
T |
|
| Q |
101 |
at |
102 |
Q |
| |
|
|| |
|
|
| T |
16726199 |
at |
16726198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 21 - 240
Target Start/End: Complemental strand, 14652886 - 14652667
Alignment:
| Q |
21 |
cctgcagattctcctcaatgggaaaaaattgatcatgattaccaagattttgggaaagaagaaagaaatctacgtcttgcattgtctactgatggaataa |
120 |
Q |
| |
|
||||||||||| || || |||| ||||||||||||||||| | |||||||||||||||| |||||||||||| | ||| |||||||||||||||| | |
|
|
| T |
14652886 |
cctgcagattcgccacagtgggctaaaattgatcatgattatcctgattttgggaaagaagcaagaaatctacgcttggcactgtctactgatggaatga |
14652787 |
T |
|
| Q |
121 |
accctcatggtattcagagtagtaagcacactacttggccggtgattatgatgatttataacctgcctccatggctatatacgaagcgcaagtacatgat |
220 |
Q |
| |
|
|||| |||||| |||| |||| | || ||||| |||||| || ||||||||||| ||||||||||| ||| || |||||| |||| |||||| |
|
|
| T |
14652786 |
acccacatggttttcaaagtatcccaaataccgtatggcctgtgattttggtgatttataacttgcctccatggttatgtatgaagcgtaagttcatgat |
14652687 |
T |
|
| Q |
221 |
gctgacaatgttaatctctg |
240 |
Q |
| |
|
| || | |||||||| |||| |
|
|
| T |
14652686 |
gttgtcgatgttaatttctg |
14652667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 64; Significance: 4e-28; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 13 - 240
Target Start/End: Original strand, 6773070 - 6773297
Alignment:
| Q |
13 |
ttcgacatcctgcagattctcctcaatgggaaaaaattgatcatgattaccaagattttgggaaagaagaaagaaatctacgtcttgcattgtctactga |
112 |
Q |
| |
|
||||||| ||||||||||| || || |||| ||||||||||||||||| | |||||||| ||||||| ||||||||||||| | ||| |||||||||| |
|
|
| T |
6773070 |
ttcgacaccctgcagattcgccacagtgggctaaaattgatcatgattatcctgattttggaaaagaagcaagaaatctacgtttggcactgtctactga |
6773169 |
T |
|
| Q |
113 |
tggaataaaccctcatggtattcagagtagtaagcacactacttggccggtgattatgatgatttataacctgcctccatggctatatacgaagcgcaag |
212 |
Q |
| |
|
|||||| ||||| |||||| |||| |||| | || ||||| |||||| || ||||||||||| ||||||||||||||| || |||||| ||| |
|
|
| T |
6773170 |
tggaatgaacccacatggttttcaaagtatcccaaataccgtatggcctgtgattttggtgatttataacttgcctccatggctatgtatgaagcgtaag |
6773269 |
T |
|
| Q |
213 |
tacatgatgctgacaatgttaatctctg |
240 |
Q |
| |
|
| ||||||| || | |||||||| |||| |
|
|
| T |
6773270 |
ttcatgatgttgtctatgttaatttctg |
6773297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 21 - 235
Target Start/End: Complemental strand, 34211302 - 34211088
Alignment:
| Q |
21 |
cctgcagattctcctcaatgggaaaaaattgatcatgattaccaagattttgggaaagaagaaagaaatctacgtcttgcattgtctactgatggaataa |
120 |
Q |
| |
|
||||||||||| || || |||| ||||||||||||||||| | |||||||||||||||| |||||||||||| | ||| |||||||||||||||| | |
|
|
| T |
34211302 |
cctgcagattcgccacagtgggctaaaattgatcatgattatcctgattttgggaaagaagcaagaaatctacgcttggcactgtctactgatggaatga |
34211203 |
T |
|
| Q |
121 |
accctcatggtattcagagtagtaagcacactacttggccggtgattatgatgatttataacctgcctccatggctatatacgaagcgcaagtacatgat |
220 |
Q |
| |
|
|| | |||||| |||| |||| | || ||||| |||||| || ||||||||||| ||||||||||| ||| || |||||| |||| |||||| |
|
|
| T |
34211202 |
acgcacatggttttcaaagtatcccaaataccgtatggcctgtgattttggtgatttataacttgcctccatggttatgtatgaagcgtaagttcatgat |
34211103 |
T |
|
| Q |
221 |
gctgacaatgttaat |
235 |
Q |
| |
|
| || | |||||||| |
|
|
| T |
34211102 |
gttgtcgatgttaat |
34211088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 13 - 240
Target Start/End: Complemental strand, 129969 - 129742
Alignment:
| Q |
13 |
ttcgacatcctgcagattctcctcaatgggaaaaaattgatcatgattaccaagattttgggaaagaagaaagaaatctacgtcttgcattgtctactga |
112 |
Q |
| |
|
||||||| ||||||||||| || || |||| ||||||||||||||||| | ||||||||||||||| |||||||||||| | ||| |||||||||| |
|
|
| T |
129969 |
ttcgacaccctgcagattcgccacagtgggctaaaattgatcatgattatcctaattttgggaaagaagcaagaaatctacgcttggcactgtctactga |
129870 |
T |
|
| Q |
113 |
tggaataaaccctcatggtattcagagtagtaagcacactacttggccggtgattatgatgatttataacctgcctccatggctatatacgaagcgcaag |
212 |
Q |
| |
|
|||||| ||||| |||||| |||| |||| |||| ||||| |||||| || ||||||||||| ||||||||||| ||| || |||||| ||| |
|
|
| T |
129869 |
tggaatgaacccacatggttttcaaagtatcccaaacaccgtatggcctgtgattttggtgatttataacttgcctccatggttatgtatgaagcgtaag |
129770 |
T |
|
| Q |
213 |
tacatgatgctgacaatgttaatctctg |
240 |
Q |
| |
|
| ||||||| || | |||||||| |||| |
|
|
| T |
129769 |
ttcatgatgttgtcgatgttaatttctg |
129742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University