View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10563_low_6 (Length: 232)
Name: NF10563_low_6
Description: NF10563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10563_low_6 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 12 - 214
Target Start/End: Original strand, 37960996 - 37961198
Alignment:
| Q |
12 |
gcaaaggtggttttcaagctgggtcaatgaaggaaacaaatccaaaagagaagctgaattacttgtgcaaatcataaatttaaccgctggatattggtca |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37960996 |
gcaaaggtggttttcaagctgggtcaatgaaggaaacaaatccaaaagagaagctaaattacttgtgcaaatcataaatttaaccgctggatattggtca |
37961095 |
T |
|
| Q |
112 |
aaagaagtacagctcaatcctgagtaccagaaactacttgaagtcacaaacggaatctgcactggtctcagtaattaccaaagcaacaaggttggtaatg |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| |||||| |
|
|
| T |
37961096 |
aaagaagtacagctcaatcctgagtaccagaaactacttgaagtcacaaacggaatctgcactggcctccgtaattaccaaagcaacaaggttagtaatg |
37961195 |
T |
|
| Q |
212 |
aat |
214 |
Q |
| |
|
||| |
|
|
| T |
37961196 |
aat |
37961198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 128; Significance: 3e-66; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 12 - 215
Target Start/End: Complemental strand, 12633643 - 12633440
Alignment:
| Q |
12 |
gcaaaggtggttttcaagctgggtcaatgaaggaaacaaatccaaaagagaagctgaattacttgtgcaaatcataaatttaaccgctggatattggtca |
111 |
Q |
| |
|
|||||||||||| ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
12633643 |
gcaaaggtggttctcaagctggcactatgaaggaaacaaatccaaaagagaagctgaattacttgtgcaaatcataaatttaaccgctggatatttgtca |
12633544 |
T |
|
| Q |
112 |
aaagaagtacagctcaatcctgagtaccagaaactacttgaagtcacaaacggaatctgcactggtctcagtaattaccaaagcaacaaggttggtaatg |
211 |
Q |
| |
|
||||||||||| ||||| ||||||||||||||||||||| | ||||| || |||||||||| || ||| ||||||| |||| |||||||||| ||| || |
|
|
| T |
12633543 |
aaagaagtacaactcaaccctgagtaccagaaactactttatgtcactaatagaatctgcaccggcctccgtaattaacaaatcaacaaggttagtagtg |
12633444 |
T |
|
| Q |
212 |
aatg |
215 |
Q |
| |
|
|||| |
|
|
| T |
12633443 |
aatg |
12633440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 99; Significance: 5e-49; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 38 - 196
Target Start/End: Complemental strand, 31151269 - 31151111
Alignment:
| Q |
38 |
atgaaggaaacaaatccaaaagagaagctgaattacttgtgcaaatcataaatttaaccgctggatattggtcaaaagaagtacagctcaatcctgagta |
137 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||||| ||||||| ||||| |||||||| ||||| |
|
|
| T |
31151269 |
atgaaggaaacaaatccaaaagagaagctgaattacttgtggaaatcataaatttaaccgcgggaaattggacaaaagatgtacatctcaatccagagta |
31151170 |
T |
|
| Q |
138 |
ccagaaactacttgaagtcacaaacggaatctgcactggtctcagtaattaccaaagca |
196 |
Q |
| |
|
| | ||||||||||| ||||||||| |||||||||||| ||| |||||| |||||||| |
|
|
| T |
31151169 |
caataaactacttgatgtcacaaacataatctgcactggcctccgtaatttccaaagca |
31151111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University