View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10563_low_9 (Length: 214)
Name: NF10563_low_9
Description: NF10563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10563_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 153; Significance: 3e-81; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 20 - 200
Target Start/End: Original strand, 36075050 - 36075230
Alignment:
| Q |
20 |
cgttgcacttatgtgaaccttcagtagcatctgaacctccgttacatttagaaggggaacctaaatcttcggtagcatctggacctccattatatttaga |
119 |
Q |
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| T |
36075050 |
cgttgcacttatgtgaaccttcggtagcatctggacctccgttacatttagaaggggaacctaaatcttcggtagcatctgaacctccattatatttaga |
36075149 |
T |
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| Q |
120 |
tgggaaacttaaatcttcgatagcagctggacctccattgcatctaagagaagaatctaaatcttcggtagcatcatctct |
200 |
Q |
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| T |
36075150 |
tggaaaacttaaatcttcgatagcagctggacctccattgcatctaggaggagaatcaaaatcttcggtagcatcatctct |
36075230 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 34 - 194
Target Start/End: Original strand, 36146439 - 36146599
Alignment:
| Q |
34 |
gaaccttcagtagcatctgaacctccgttacatttagaaggggaacctaaatcttcggtagcatctggacctccattatatttagatgggaaacttaaat |
133 |
Q |
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| T |
36146439 |
gaaccttcgatagcatctagatctccattgcacttaggaggagaacctaaatcttcggtagcatcttgacctccattgcatttagatggggaacttaaat |
36146538 |
T |
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| Q |
134 |
cttcgatagcagctggacctccattgcatctaagagaagaatctaaatcttcggtagcatc |
194 |
Q |
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| T |
36146539 |
tttcggtaacatctgaacctccattgcacttagaaggggaatctaaatcttcggtaacatc |
36146599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 99
Target Start/End: Original strand, 36146548 - 36146600
Alignment:
| Q |
47 |
catctgaacctccgttacatttagaaggggaacctaaatcttcggtagcatct |
99 |
Q |
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| T |
36146548 |
catctgaacctccattgcacttagaaggggaatctaaatcttcggtaacatct |
36146600 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 43 - 186
Target Start/End: Complemental strand, 26530717 - 26530575
Alignment:
| Q |
43 |
gtagcatctgaacctccgttacatttagaaggggaacctaaatcttcggtagcatctggacctccattatatttagatgggaaacttaaatcttcgatag |
142 |
Q |
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| T |
26530717 |
gtagcatttgaacctccattgcacttata-gggaaacccaaatcttcggcagcatctgaacctccaatgcacttaggtgggaaacctaaatcttgggtag |
26530619 |
T |
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| Q |
143 |
cagctggacctccattgcatctaagagaagaatctaaatcttcg |
186 |
Q |
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| T |
26530618 |
catctagacctccattgcacttaggaggggaacctaaatcttcg |
26530575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 141
Target Start/End: Complemental strand, 26530668 - 26530572
Alignment:
| Q |
45 |
agcatctgaacctccgttacatttagaaggggaacctaaatcttcggtagcatctggacctccattatatttagatgggaaacttaaatcttcgata |
141 |
Q |
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||||||||||||||| | || |||| ||| |||||||||||| |||||||||| |||||||||| | |||| ||| ||| ||||||||||||| |
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| T |
26530668 |
agcatctgaacctccaatgcacttaggtgggaaacctaaatcttgggtagcatctagacctccattgcacttaggaggggaacctaaatcttcgata |
26530572 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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