View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10564_1 (Length: 868)

Name: NF10564_1
Description: NF10564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10564_1
NF10564_1
[»] chr1 (11 HSPs)
chr1 (366-748)||(52548830-52549216)
chr1 (1-179)||(52549348-52549516)
chr1 (1-274)||(15594632-15594917)
chr1 (218-274)||(52549297-52549353)
chr1 (1-239)||(34467108-34467358)
chr1 (277-326)||(52549211-52549260)
chr1 (493-558)||(34465174-34465239)
chr1 (501-558)||(4677466-4677523)
chr1 (439-484)||(4678136-4678181)
chr1 (201-274)||(4678842-4678915)
chr1 (408-484)||(15595550-15595627)
[»] chr2 (31 HSPs)
chr2 (1-274)||(7541824-7542109)
chr2 (1-274)||(14703006-14703291)
chr2 (1-274)||(12258866-12259151)
chr2 (4-274)||(11999009-11999290)
chr2 (4-274)||(12245691-12245973)
chr2 (124-274)||(12234422-12234572)
chr2 (393-484)||(7542725-7542816)
chr2 (277-391)||(7542155-7542264)
chr2 (404-484)||(11999904-11999984)
chr2 (14-122)||(16662441-16662549)
chr2 (494-568)||(12235910-12235984)
chr2 (277-358)||(12245564-12245645)
chr2 (4-98)||(43625013-43625107)
chr2 (399-484)||(12235194-12235279)
chr2 (493-558)||(12244329-12244394)
chr2 (399-484)||(12258159-12258244)
chr2 (401-484)||(16657095-16657178)
chr2 (281-355)||(14703341-14703415)
chr2 (493-559)||(14705574-14705640)
chr2 (148-274)||(16662277-16662403)
chr2 (277-358)||(11999336-11999417)
chr2 (399-484)||(12244984-12245069)
chr2 (491-572)||(12257826-12257907)
chr2 (408-484)||(43625924-43626000)
chr2 (277-358)||(12234618-12234699)
chr2 (404-484)||(14703918-14703998)
chr2 (393-484)||(16661570-16661661)
chr2 (124-274)||(43625145-43625295)
chr2 (277-358)||(12258739-12258820)
chr2 (277-358)||(16657675-16657756)
chr2 (64-106)||(5446234-5446276)
[»] chr4 (8 HSPs)
chr4 (1-274)||(35132054-35132340)
chr4 (14-274)||(30774863-30775135)
chr4 (399-484)||(35132951-35133036)
chr4 (277-349)||(35132386-35132458)
chr4 (133-212)||(23588080-23588159)
chr4 (133-212)||(23596932-23597011)
chr4 (410-484)||(9335469-9335543)
chr4 (410-484)||(30775768-30775842)
[»] chr7 (44 HSPs)
chr7 (1-274)||(6789110-6789395)
chr7 (148-274)||(17267696-17267822)
chr7 (18-274)||(27831160-27831428)
chr7 (18-274)||(17259856-17260124)
chr7 (1-274)||(8575924-8576209)
chr7 (16-274)||(8545246-8545516)
chr7 (148-274)||(8570068-8570194)
chr7 (148-274)||(8616438-8616564)
chr7 (135-259)||(8601718-8601842)
chr7 (25-274)||(8581322-8581583)
chr7 (410-484)||(13333034-13333108)
chr7 (408-484)||(6790026-6790102)
chr7 (145-263)||(8383172-8383290)
chr7 (410-480)||(8585288-8585358)
chr7 (145-211)||(8590392-8590458)
chr7 (149-224)||(7878068-7878143)
chr7 (139-274)||(8585991-8586126)
chr7 (27-122)||(29582290-29582385)
chr7 (410-480)||(8629048-8629118)
chr7 (410-484)||(8667935-8668009)
chr7 (410-484)||(10493952-10494026)
chr7 (19-116)||(29578127-29578224)
chr7 (408-480)||(3147786-3147858)
chr7 (145-244)||(8537790-8537889)
chr7 (215-274)||(8659187-8659246)
chr7 (130-212)||(8102406-8102488)
chr7 (25-111)||(27846566-27846652)
chr7 (122-187)||(8636715-8636780)
chr7 (410-475)||(8671217-8671282)
chr7 (6-98)||(3146867-3146959)
chr7 (501-565)||(7876753-7876817)
chr7 (148-244)||(8609674-8609770)
chr7 (501-565)||(8647820-8647884)
chr7 (393-484)||(8654949-8655040)
chr7 (16-95)||(10494850-10494929)
chr7 (4-106)||(8590239-8590341)
chr7 (399-484)||(1301969-1302054)
chr7 (501-561)||(1302430-1302490)
chr7 (18-98)||(17267554-17267634)
chr7 (408-484)||(17268453-17268529)
chr7 (16-95)||(13333844-13333923)
chr7 (501-567)||(8655468-8655534)
chr7 (501-563)||(8668584-8668646)
chr7 (493-522)||(8610775-8610804)
[»] chr8 (3 HSPs)
chr8 (1-274)||(43744414-43744699)
chr8 (40-265)||(12528141-12528378)
chr8 (431-484)||(43745384-43745437)
[»] chr5 (3 HSPs)
chr5 (1-274)||(28219516-28219801)
chr5 (408-484)||(28220465-28220541)
chr5 (500-565)||(28221065-28221130)
[»] chr6 (1 HSPs)
chr6 (439-484)||(28911127-28911172)


Alignment Details
Target: chr1 (Bit Score: 279; Significance: 1e-156; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 366 - 748
Target Start/End: Complemental strand, 52549216 - 52548830
Alignment:
Q  366 cttttgaattcgcactaatgtccactccattatcaccggcagtgaccttgaatgaccataacaatatatcatcttgaacaacaggatcactaaacttctt 465  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52549216 cttttgaattcccactaatgtccactccattatcaccggcagtgaccttgaatgaccataacaatatatcatcttgaacaacaggatcactaaacttctt 52549117  T
Q  466 accaattaacctcttagcacg-accgtattgttcctgccatacagcaacacatgaatacgtagtacaaaggtctattcccacagcaagtccttcgtattt 564  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52549116 accaattaacctcttagcacgtaccgtattgttcctgccatacagcaacacatgaatacgtagtacaaaggtctattcccacagcaagtccttcgtattt 52549017  T
Q  565 tctcttcaaaaaggaaaagaatcactcgagatagagggtctaatgccctaataggtttctccacctcttttcaaatac-aaataccc--nnnnnnnnnnn 661  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||                 
T  52549016 tctcttcaaaaaggaaaagaatcactcgagagagagggtctaatgccctaataggtttctccacctcttttcaaatacaaaatacccttttttattttta 52548917  T
Q  662 nnnnnaccacggtttcacactaaagtataaatgnnnnnnnaaatcaaaatcaaattcatttaacacatacaaaccacattcgtctct 748  Q
         ||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||| |||||||||||||||||    
T  52548916 tttttaccacggtttcacactaaagtataaatgtttttttaaatcaaaatcaaattcatttaacacatataaaccacattcgtctct 52548830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 136; E-Value: 2e-70
Query Start/End: Original strand, 1 - 179
Target Start/End: Complemental strand, 52549516 - 52549348
Alignment:
Q  1 ggtgtaacatcctgcagcaccaactttggaacattctgaatgccttcactcaacaatgcagcctgaacagctgcgccataagccacaacctcatcaggat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  52549516 ggtgtaacatcctgcagcaccaactttggaacattctgaatgccttcactcaacaatgcagcctgaacagctgcgccataagctacaacctcatcaggat 52549417  T
Q  101 taatgcccttgcacaactccttgtcctgtaacagttgttgtacattgggaatcctagaagacccaccaacaaggacaac 179  Q
    |||||||||||||||||||||||||||          |||||||||||||| |||||||||||||||||||||||||||    
T  52549416 taatgcccttgcacaactccttgtcct----------ttgtacattgggaaacctagaagacccaccaacaaggacaac 52549348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 1 - 274
Target Start/End: Original strand, 15594632 - 15594917
Alignment:
Q  1 ggtgtaacatcctgcagcaccaactttggaacattctgaatgccttcactcaacaatgcagcctgaacagctgcgccataagccacaacctcatcaggat 100  Q
    |||| |||||| || | |||||| ||||||||||| | ||  |||||||||||||| |||||||| |||||||| |||||||| ||| |||||||||| |    
T  15594632 ggtgcaacatcttgtatcaccaagtttggaacatttttaaaaccttcactcaacaaagcagcctggacagctgcaccataagcaacagcctcatcagggt 15594731  T
Q  101 taatgcccttgcacaactccttg------------tcctgtaacagttgttgtacattgggaatcctagaagacccaccaacaaggacaacatcatctac 188  Q
    | |||| | ||||||| |||||             ||||  || |||||||| || |||||||||||||||||||||||||||| ||||| ||||| |||    
T  15594732 tgatgctcatgcacaattcctttccctcgaaaaaatccttcaatagttgttgcactttgggaatcctagaagacccaccaacaatgacaatatcatttac 15594831  T
Q  189 cctgctcttgtccatcttagcatcaataagacaactttcaacaatcttcatacactccttaaaaaggtccatattcatttcctcaa 274  Q
     || ||||| | |||||||||||||  ||||||||| ||||| ||||||||||| |||||||||| |||||| || ||||| ||||    
T  15594832 actactcttattcatcttagcatcatcaagacaactctcaactatcttcatacaatccttaaaaaagtccatgttgatttcttcaa 15594917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 218 - 274
Target Start/End: Complemental strand, 52549353 - 52549297
Alignment:
Q  218 gacaactttcaacaatcttcatacactccttaaaaaggtccatattcatttcctcaa 274  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52549353 gacaactttcaacaatcttcatacactccttaaaaaggtccatattcatttcctcaa 52549297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 34467358 - 34467108
Alignment:
Q  1 ggtgtaacatcctgcagcaccaactttggaacattctgaatgccttcactcaacaatgcagcctgaacagctgcgccataagccacaacctcatcaggat 100  Q
    |||||||||||  |||||||||| ||||||||||| | || ||||| ||||||||| ||||| || ||||||||| ||||||| ||| |||||||||| |    
T  34467358 ggtgtaacatctcgcagcaccaagtttggaacattgttaaagcctttactcaacaaagcagcttgcacagctgcgacataagcgacagcctcatcagggt 34467259  T
Q  101 taatgcccttgcacaactcctt------------gtcctgtaacagttgttgtacattgggaatcctagaagacccaccaacaaggacaacatcatctac 188  Q
    | ||||  ||||| |  |||||            |||| | || || || || || ||||||||||||||||| || || ||||||||| ||||||  ||    
T  34467258 tgatgctattgcatagatccttaccattgaaaaagtcccgcaatagctgctgcactttgggaatcctagaagagcccccgacaaggacagcatcatgcac 34467159  T
Q  189 cctgctcttgtccatcttagcatcaataagacaactttcaacaatcttcat 239  Q
     || ||| |||||||||||||||||| |||||||||  |||||||| ||||    
T  34467158 actactcgtgtccatcttagcatcaacaagacaactcacaacaatcctcat 34467108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 277 - 326
Target Start/End: Complemental strand, 52549260 - 52549211
Alignment:
Q  277 aagaatctacttcaatagtggcgacaacaacgaaagaaagtgttcttttg 326  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52549260 aagaatctacttcaatagtggcgacaacaacgaaagaaagtgttcttttg 52549211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 493 - 558
Target Start/End: Complemental strand, 34465239 - 34465174
Alignment:
Q  493 ttgttcctgccatacagcaacacatgaatacgtagtacaaaggtctattcccacagcaagtccttc 558  Q
    ||||||||||||||| ||||||||||| || || || | ||||||||||||||||||| |||||||    
T  34465239 ttgttcctgccatactgcaacacatgagtaggttgtgccaaggtctattcccacagcacgtccttc 34465174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 501 - 558
Target Start/End: Complemental strand, 4677523 - 4677466
Alignment:
Q  501 gccatacagcaacacatgaatacgtagtacaaaggtctattcccacagcaagtccttc 558  Q
    |||| ||||||||||||||||| ||||| | ||| ||||||||||||||| |||||||    
T  4677523 gccacacagcaacacatgaataagtagttccaagatctattcccacagcacgtccttc 4677466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 439 - 484
Target Start/End: Complemental strand, 4678181 - 4678136
Alignment:
Q  439 ttgaacaacaggatcactaaacttcttaccaattaacctcttagca 484  Q
    ||||||||||| ||||||| || || ||||||||||||||||||||    
T  4678181 ttgaacaacagaatcactatacctcctaccaattaacctcttagca 4678136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 274
Target Start/End: Complemental strand, 4678915 - 4678842
Alignment:
Q  201 catcttagcatcaataagacaactttcaacaatcttcatacactccttaaaaaggtccatattcatttcctcaa 274  Q
    |||||| | |||| |||||||||| | |||| | | ||||||||| || |||||||||||||| ||||||||||    
T  4678915 catctttgaatcactaagacaactcttaacagtttccatacactcgttgaaaaggtccatattaatttcctcaa 4678842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 408 - 484
Target Start/End: Original strand, 15595550 - 15595627
Alignment:
Q  408 tgaccttgaatgaccataacaatatatcatcttgaacaa-caggatcactaaacttcttaccaattaacctcttagca 484  Q
    |||||||||||| ||| |||  |||||||| |||||||| ||| ||||||||||||| |||  ||||| |||||||||    
T  15595550 tgaccttgaatggccacaactttatatcattttgaacaaacagaatcactaaacttcctactgattaatctcttagca 15595627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 133; Significance: 1e-68; HSPs: 31)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 133; E-Value: 1e-68
Query Start/End: Original strand, 1 - 274
Target Start/End: Original strand, 7541824 - 7542109
Alignment:
Q  1 ggtgtaacatcctgcagcaccaactttggaacattctgaatgccttcactcaacaatgcagcctgaacagctgcgccataagccacaacctcatcaggat 100  Q
    |||||||||||||||||||||||||||||| | |||| || |||| |||||||||||||||||||||||||||| |||||||| ||| ||||||||||||    
T  7541824 ggtgtaacatcctgcagcaccaactttggagcgttcttaacgcctccactcaacaatgcagcctgaacagctgccccataagcaacagcctcatcaggat 7541923  T
Q  101 taatgcccttgcacaactcctt------------gtcctgtaacagttgttgtacattgggaatcctagaagacccaccaacaaggacaacatcatctac 188  Q
    |||||| ||||||||| |||||            ||||| ||| || || |||||  |||||||||| |||||||| || |||||||||||||||||||     
T  7541924 taatgctcttgcacaagtcctttccattgaaaaagtcctttaatagctgatgtactatgggaatcctcgaagacccgccgacaaggacaacatcatctat 7542023  T
Q  189 cctgctcttgtccatcttagcatcaataagacaactttcaacaatcttcatacactccttaaaaaggtccatattcatttcctcaa 274  Q
    | ||||||||||||| ||||||||||||||||| ||| |||||||| |||||||||| |||||||| ||||||||||| |||||||    
T  7542024 catgctcttgtccatattagcatcaataagacagcttccaacaatcgtcatacactcgttaaaaagatccatattcatctcctcaa 7542109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 129; E-Value: 3e-66
Query Start/End: Original strand, 1 - 274
Target Start/End: Original strand, 14703006 - 14703291
Alignment:
Q  1 ggtgtaacatcctgcagcaccaactttggaacattctgaatgccttcactcaacaatgcagcctgaacagctgcgccataagccacaacctcatcaggat 100  Q
    ||||||| |||||| ||||||||||| ||||||||||  | | ||||||||||||| ||||||||||||||||| |||||||| ||| | |||||||| |    
T  14703006 ggtgtaatatcctgaagcaccaacttcggaacattcttgacgtcttcactcaacaaagcagcctgaacagctgccccataagctacagcttcatcagggt 14703105  T
Q  101 taatgcccttgcacaactcctt------------gtcctgtaacagttgttgtacattgggaatcctagaagacccaccaacaaggacaacatcatctac 188  Q
    ||||||  ||||||||||||||            ||||||||| | ||| ||||| |||||||||| |||||||||||| ||||| ||||||||||||||    
T  14703106 taatgctgttgcacaactccttcccctggaaaaagtcctgtaataattgctgtactttgggaatccgagaagacccaccgacaagaacaacatcatctac 14703205  T
Q  189 cctgctcttgtccatcttagcatcaataagacaactttcaacaatcttcatacactccttaaaaaggtccatattcatttcctcaa 274  Q
     || |||||||||||||||||||||||||||||||| ||||||||||||| |||||| ||||||| ||||||||||||||| ||||    
T  14703206 tctactcttgtccatcttagcatcaataagacaactctcaacaatcttcacacactcattaaaaaagtccatattcatttcttcaa 14703291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 1 - 274
Target Start/End: Complemental strand, 12259151 - 12258866
Alignment:
Q  1 ggtgtaacatcctgcagcaccaactttggaacattctgaatgccttcactcaacaatgcagcctgaacagctgcgccataagccacaacctcatcaggat 100  Q
    |||||||||||||||||| ||||||||||||||||||| ||  ||||||| ||||| |||||||||| ||| || ||| |||| ||| ||||||||||||    
T  12259151 ggtgtaacatcctgcagctccaactttggaacattctggatatcttcacttaacaaagcagcctgaatagccgccccaaaagctacagcctcatcaggat 12259052  T
Q  101 taatgcccttgcacaact------ccttg------tcctgtaacagttgttgtacattgggaatcctagaagacccaccaacaaggacaacatcatctac 188  Q
    |||||| |||||||||||      |||||      |||||||| || || || || ||| ||||||||||||||||||| ||||||||||||||||||||    
T  12259051 taatgctcttgcacaactctttccccttgaaaaaatcctgtaatagctgctgcactttgagaatcctagaagacccacctacaaggacaacatcatctac 12258952  T
Q  189 cctgctcttgtccatcttagcatcaataagacaactttcaacaatcttcatacactccttaaaaaggtccatattcatttcctcaa 274  Q
      | ||||||||| | ||||||||  |||||||||| |||||| ||||||| || || || ||||| |||| ||| ||||||||||    
T  12258951 attactcttgtccgtgttagcatccgtaagacaactctcaacagtcttcatgcattcattgaaaagttccaaatttatttcctcaa 12258866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 4 - 274
Target Start/End: Original strand, 11999009 - 11999290
Alignment:
Q  4 gtaacatcctgcagcaccaactttggaacattctgaatgccttcactcaacaatgcagcctgaacagctgcgccataagccacaacctcatcaggattaa 103  Q
    ||||||||||||| |||||| ||||||||||||| ||   ||||||||||||| ||||| ||||||||||| |||||||| ||| |||||||||| ||||    
T  11999009 gtaacatcctgcaacaccaaatttggaacattcttaacatcttcactcaacaaagcagcttgaacagctgccccataagctacagcctcatcagggttaa 11999108  T
Q  104 tgcccttgcacaactcctt------------gtcctgtaacagttgttgtacattgggaatcctagaagacccaccaacaaggacaacatcatctaccct 191  Q
    ||| |||||||||||||||            ||| ||||| || ||||| || ||||| ||||||||||| ||||||||||| |||||||||||||   |    
T  11999109 tgctcttgcacaactccttcccgttgaaaaagtcatgtaatagctgttggactttggg-atcctagaagatccaccaacaagtacaacatcatctatagt 11999207  T
Q  192 gctcttgtccatcttagcatcaataagacaactttcaacaatcttcatacactccttaaaaaggtccatattcatttcctcaa 274  Q
     |||||||||||||| ||||| |||| |||||| |||||| |||| ||||| || |||| ||| || | ||||| ||||||||    
T  11999208 actcttgtccatctttgcatccataatacaactctcaacagtctttatacaatcattaagaagatctaaattcaattcctcaa 11999290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 4 - 274
Target Start/End: Complemental strand, 12245973 - 12245691
Alignment:
Q  4 gtaacatcctgcagcaccaactttggaacattctgaatgccttcactcaacaatgcagcctgaacagctgcgccataagccacaacctcatcaggattaa 103  Q
    ||||||||||||| |||||| ||||||||||||| ||   ||| ||||||||| ||||| ||||||||||| |||||||| ||| |||| ||||| ||||    
T  12245973 gtaacatcctgcaacaccaaatttggaacattcttaacatctttactcaacaaagcagcttgaacagctgccccataagcaacagcctcgtcagggttaa 12245874  T
Q  104 tgcccttgcacaactcctt------------gtcctgtaacagttgttgtacattgggaatcctagaagacccaccaacaaggacaacatcatctaccct 191  Q
    ||| ||||||||| |||||            ||||||||| || ||||| || ||||||||||||||||| ||||||||||| |||| ||||||||   |    
T  12245873 tgctcttgcacaattccttcccgttgaaaaagtcctgtaatagctgttggactttgggaatcctagaagatccaccaacaagtacaaaatcatctatagt 12245774  T
Q  192 gctcttgtccatcttagcatcaataagacaactttcaacaatcttcatacactccttaaaaaggtccatattcatttcctcaa 274  Q
     |||||||||||||| ||||| |||| |||||| |||||| |||| ||||| || |||| ||| || | ||||| ||||||||    
T  12245773 actcttgtccatctttgcatccataatacaactctcaacagtctttatacaatcattaagaagatctaaattcaattcctcaa 12245691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 124 - 274
Target Start/End: Original strand, 12234422 - 12234572
Alignment:
Q  124 tcctgtaacagttgttgtacattgggaatcctagaagacccaccaacaaggacaacatcatctaccctgctcttgtccatcttagcatcaataagacaac 223  Q
    ||||| || ||||| || || |||||||||||||| ||||| |||| ||||||||| ||||| ||||| || |||||||||||||||||| |||||||||    
T  12234422 tcctgcaatagttgctgcactttgggaatcctagaggacccgccaataaggacaacttcatccaccctacttttgtccatcttagcatcactaagacaac 12234521  T
Q  224 tttcaacaatcttcatacactccttaaaaaggtccatattcatttcctcaa 274  Q
    | ||||||||||||||||||||  ||| ||| |||||||||||||||||||    
T  12234522 tctcaacaatcttcatacactcaataagaagatccatattcatttcctcaa 12234572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 393 - 484
Target Start/End: Original strand, 7542725 - 7542816
Alignment:
Q  393 cattatcaccggcagtgaccttgaatgaccataacaatatatcatcttgaacaacaggatcactaaacttcttaccaattaacctcttagca 484  Q
    |||| ||||| ||||| |||||||||| |||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  7542725 cattgtcacccgcagtcaccttgaatggccataacagtatatcatcttgaacaacaggatcactaaacttcctaccaattaacctcttagca 7542816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 277 - 391
Target Start/End: Original strand, 7542155 - 7542264
Alignment:
Q  277 aagaatctacttcaatagtggcgacaacaacgaaagaaagtgttcttttggccctctcacaagcagttctcaatctcctcaactcaaggcttttgaattc 376  Q
    |||||||||| ||||||||||| ||||||| ||||||||||| |||||| ||||||||||||||||||||||| |||     ||||||||||||| ||||    
T  7542155 aagaatctacctcaatagtggcaacaacaaggaaagaaagtgatctttttgccctctcacaagcagttctcaacctc-----ctcaaggcttttggattc 7542249  T
Q  377 gcactaatgtccact 391  Q
     ||||||||||||||    
T  7542250 ccactaatgtccact 7542264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 404 - 484
Target Start/End: Original strand, 11999904 - 11999984
Alignment:
Q  404 gcagtgaccttgaatgaccataacaatatatcatcttgaacaacaggatcactaaacttcttaccaattaacctcttagca 484  Q
    |||||||||||||||| ||||||||||  |||||||||||||||| ||||||||||||||  |||||||||||||||||||    
T  11999904 gcagtgaccttgaatggccataacaatccatcatcttgaacaacaagatcactaaacttccaaccaattaacctcttagca 11999984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 14 - 122
Target Start/End: Complemental strand, 16662549 - 16662441
Alignment:
Q  14 gcagcaccaactttggaacattctgaatgccttcactcaacaatgcagcctgaacagctgcgccataagccacaacctcatcaggattaatgcccttgca 113  Q
    |||||||||| |||||||||| || |||||||||||||||||  ||||| || |||||||| |||||||| ||| |||||||||| || |||| ||||||    
T  16662549 gcagcaccaagtttggaacatccttaatgccttcactcaacacagcagcttgcacagctgccccataagcaacagcctcatcagggttgatgctcttgca 16662450  T
Q  114 caactcctt 122  Q
    |||||||||    
T  16662449 caactcctt 16662441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 494 - 568
Target Start/End: Original strand, 12235910 - 12235984
Alignment:
Q  494 tgttcctgccatacagcaacacatgaatacgtagtacaaaggtctattcccacagcaagtccttcgtattttctc 568  Q
    |||||||||||||| |||||||||||||| || |||| ||||||||| |||||||||||||||||| ||||||||    
T  12235910 tgttcctgccatactgcaacacatgaatatgttgtaccaaggtctatccccacagcaagtccttcgcattttctc 12235984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 277 - 358
Target Start/End: Complemental strand, 12245645 - 12245564
Alignment:
Q  277 aagaatctacttcaatagtggcgacaacaacgaaagaaagtgttcttttggccctctcacaagcagttctcaatctcctcaa 358  Q
    |||||||||| |||||||| || |||||||  || |||||| ||||||| ||||||||||||||||||||||||||||||||    
T  12245645 aagaatctacctcaatagttgcaacaacaagaaacgaaagtattctttttgccctctcacaagcagttctcaatctcctcaa 12245564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 4 - 98
Target Start/End: Original strand, 43625013 - 43625107
Alignment:
Q  4 gtaacatcctgcagcaccaactttggaacattctgaatgccttcactcaacaatgcagcctgaacagctgcgccataagccacaacctcatcagg 98  Q
    ||||||||  |||||||||| ||||||||||||| |||||||| |||||| |  |||||||| |||||||| |||||||| ||| ||||||||||    
T  43625013 gtaacatctcgcagcaccaattttggaacattcttaatgcctttactcaaaatagcagcctggacagctgcaccataagcaacagcctcatcagg 43625107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 399 - 484
Target Start/End: Original strand, 12235194 - 12235279
Alignment:
Q  399 caccggcagtgaccttgaatgaccataacaatatatcatcttgaacaacaggatcactaaacttcttaccaattaacctcttagca 484  Q
    |||| |||| ||||||||||| ||| ||||  | |||||||||||||||  |||||||||||||| ||||||||||||||||||||    
T  12235194 caccagcagcgaccttgaatggccacaacatcacatcatcttgaacaacttgatcactaaacttcctaccaattaacctcttagca 12235279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 493 - 558
Target Start/End: Complemental strand, 12244394 - 12244329
Alignment:
Q  493 ttgttcctgccatacagcaacacatgaatacgtagtacaaaggtctattcccacagcaagtccttc 558  Q
    ||||||||||||||| ||||||||||||||||| |||| ||||||||||||||| ||| |||||||    
T  12244394 ttgttcctgccatactgcaacacatgaatacgttgtaccaaggtctattcccacggcacgtccttc 12244329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 399 - 484
Target Start/End: Complemental strand, 12258244 - 12258159
Alignment:
Q  399 caccggcagtgaccttgaatgaccataacaatatatcatcttgaacaacaggatcactaaacttcttaccaattaacctcttagca 484  Q
    |||| |||||||| || |||| ||| |||| ||||||||||||||| ||  |||||||||||||| ||||||||||||||||||||    
T  12258244 caccagcagtgactttaaatggccacaacattatatcatcttgaactacttgatcactaaacttcctaccaattaacctcttagca 12258159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 401 - 484
Target Start/End: Complemental strand, 16657178 - 16657095
Alignment:
Q  401 ccggcagtgaccttgaatgaccataacaatatatcatcttgaacaacaggatcactaaacttcttaccaattaacctcttagca 484  Q
    |||||| |||||||||||| ||| || |  ||||||| ||||||||||||||||||||||||| |||| |||||||| ||||||    
T  16657178 ccggcaatgaccttgaatggccacaagatgatatcattttgaacaacaggatcactaaacttcctaccgattaaccttttagca 16657095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 281 - 355
Target Start/End: Original strand, 14703341 - 14703415
Alignment:
Q  281 atctacttcaatagtggcgacaacaacgaaagaaagtgttcttttggccctctcacaagcagttctcaatctcct 355  Q
    |||||| |||||||||||||||||   |||||||||||||||||| |||||||| ||||| |||||||| |||||    
T  14703341 atctacctcaatagtggcgacaacttggaaagaaagtgttctttttgccctctcgcaagcggttctcaagctcct 14703415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 493 - 559
Target Start/End: Original strand, 14705574 - 14705640
Alignment:
Q  493 ttgttcctgccatacagcaacacatgaatacgtagtacaaaggtctattcccacagcaagtccttcg 559  Q
    ||||||||||||||| ||||||||||| ||||| |||| |||||||||||||||||||  |||||||    
T  14705574 ttgttcctgccatactgcaacacatgagtacgttgtaccaaggtctattcccacagcacatccttcg 14705640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 148 - 274
Target Start/End: Complemental strand, 16662403 - 16662277
Alignment:
Q  148 ggaatcctagaagacccaccaacaaggacaacatcatctaccctgctcttgtccatcttagcatcaataagacaactttcaacaatcttcatacactcct 247  Q
    ||||||||||| || || || ||||| |||| ||||| ||| |  | |||||||||||| | ||| | || |||||| |||||||||||||||||||| |    
T  16662403 ggaatcctagacgagcccccgacaagaacaatatcatgtacaccccccttgtccatctttgaatccacaaaacaactctcaacaatcttcatacactcgt 16662304  T
Q  248 taaaaaggtccatattcatttcctcaa 274  Q
    |||||||| ||||||| ||||| ||||    
T  16662303 taaaaaggcccatattgatttcttcaa 16662277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 277 - 358
Target Start/End: Original strand, 11999336 - 11999417
Alignment:
Q  277 aagaatctacttcaatagtggcgacaacaacgaaagaaagtgttcttttggccctctcacaagcagttctcaatctcctcaa 358  Q
    |||||||||| |||||||| || |||||||  || || ||| ||||||| ||||||||||||||||||||||| ||||||||    
T  11999336 aagaatctacctcaatagttgcaacaacaagaaatgatagtattctttttgccctctcacaagcagttctcaacctcctcaa 11999417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 399 - 484
Target Start/End: Complemental strand, 12245069 - 12244984
Alignment:
Q  399 caccggcagtgaccttgaatgaccataacaatatatcatcttgaacaacaggatcactaaacttcttaccaattaacctcttagca 484  Q
    |||| |||||||||||||| | |||||| |||  ||||||  |||||| |||||||||||||||| |||||||||| |||||||||    
T  12245069 caccagcagtgaccttgaacggccataataatgcatcatccagaacaataggatcactaaacttcctaccaattaatctcttagca 12244984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 491 - 572
Target Start/End: Complemental strand, 12257907 - 12257826
Alignment:
Q  491 tattgttcctgccatacagcaacacatgaatacgtagtacaaaggtctattcccacagcaagtccttcgtattttctcttca 572  Q
    |||||||||||||| |||||||| ||||||||||| || | |||||| ||||| |  |||||||||||||||||||| ||||    
T  12257907 tattgttcctgccaaacagcaacgcatgaatacgttgtgccaaggtcaattcctatcgcaagtccttcgtattttcttttca 12257826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 408 - 484
Target Start/End: Original strand, 43625924 - 43626000
Alignment:
Q  408 tgaccttgaatgaccataacaatatatcatcttgaacaacaggatcactaaacttcttaccaattaacctcttagca 484  Q
    ||||| |||||| ||| ||||  ||||||| ||||||||||| ||||||||||||| |||| |||||||||||||||    
T  43625924 tgaccctgaatggccacaacatgatatcattttgaacaacagaatcactaaacttcctaccgattaacctcttagca 43626000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 277 - 358
Target Start/End: Original strand, 12234618 - 12234699
Alignment:
Q  277 aagaatctacttcaatagtggcgacaacaacgaaagaaagtgttcttttggccctctcacaagcagttctcaatctcctcaa 358  Q
    |||||||||| ||||| || || ||||||| |||||| | || |||||| |||||||||||||||||||| || ||||||||    
T  12234618 aagaatctacctcaatggttgcaacaacaaggaaagacaatgatctttttgccctctcacaagcagttcttaacctcctcaa 12234699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 404 - 484
Target Start/End: Original strand, 14703918 - 14703998
Alignment:
Q  404 gcagtgaccttgaatgaccataacaatatatcatcttgaacaacaggatcactaaacttcttaccaattaacctcttagca 484  Q
    ||||||||||| |||| |||||| | ||||||||||||||||| |||||| ||||||||| | || |  ||||||||||||    
T  14703918 gcagtgaccttaaatggccataaaagtatatcatcttgaacaataggatcgctaaacttccttcccaacaacctcttagca 14703998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 393 - 484
Target Start/End: Complemental strand, 16661661 - 16661570
Alignment:
Q  393 cattatcaccggcagtgaccttgaatgaccataacaatatatcatcttgaacaacaggatcactaaacttcttaccaattaacctcttagca 484  Q
    ||||| |||| ||| | |||||||| | ||| |||| |||||| | ||||||||| || |||||||| ||| ||||||||||||||||||||    
T  16661661 cattaacaccagcaataaccttgaacggccacaacagtatatctttttgaacaacggggtcactaaatttcctaccaattaacctcttagca 16661570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 124 - 274
Target Start/End: Original strand, 43625145 - 43625295
Alignment:
Q  124 tcctgtaacagttgttgtacattgggaatcctagaagacccaccaacaaggacaacatcatctaccctgctcttgtccatcttagcatcaataagacaac 223  Q
    ||||| ||||| |||| ||| || ||||| ||||| || || ||||||||||||||||| |  |     |||||||||| ||| ||||||||||||||||    
T  43625145 tcctgcaacagctgttttacttttggaattctagaggagccgccaacaaggacaacatcgtggatagcactcttgtccaacttggcatcaataagacaac 43625244  T
Q  224 tttcaacaatcttcatacactccttaaaaaggtccatattcatttcctcaa 274  Q
    | | |||| | |||| |||||| || ||||| |||||||| ||||| ||||    
T  43625245 tcttaacagttttcaaacactcgttgaaaagatccatatttatttcatcaa 43625295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 277 - 358
Target Start/End: Complemental strand, 12258820 - 12258739
Alignment:
Q  277 aagaatctacttcaatagtggcgacaacaacgaaagaaagtgttcttttggccctctcacaagcagttctcaatctcctcaa 358  Q
    |||||||||  |||||||| || |||||||   ||||||||| |||||| || ||||||||||| ||| |||||||||||||    
T  12258820 aagaatctatctcaatagttgcaacaacaagataagaaagtgatctttttgcactctcacaagctgttttcaatctcctcaa 12258739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 277 - 358
Target Start/End: Complemental strand, 16657756 - 16657675
Alignment:
Q  277 aagaatctacttcaatagtggcgacaacaacgaaagaaagtgttcttttggccctctcacaagcagttctcaatctcctcaa 358  Q
    |||||||||| |||| ||||| ||||| | | ||||| ||||| || || ||||||||||| ||||||||||| ||||||||    
T  16657756 aagaatctacctcaacagtggtgacaaaagcaaaagagagtgtcctctttgccctctcacatgcagttctcaacctcctcaa 16657675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 64 - 106
Target Start/End: Complemental strand, 5446276 - 5446234
Alignment:
Q  64 tgaacagctgcgccataagccacaacctcatcaggattaatgc 106  Q
    |||||||| ||||||||||||||| | ||||||||||||||||    
T  5446276 tgaacagcggcgccataagccacagcttcatcaggattaatgc 5446234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 102; Significance: 3e-50; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 1 - 274
Target Start/End: Original strand, 35132054 - 35132340
Alignment:
Q  1 ggtgtaacatcctgcagcaccaactttggaacattctgaatgccttcactcaacaatgcagcctgaacagctgcgccataagccacaacctcatcaggat 100  Q
    |||||||||||||| | |||||||||||||||||| |  ||||||| ||||||||| ||||||||||| ||||| |||||||| ||| ||||||| || |    
T  35132054 ggtgtaacatcctgtaacaccaactttggaacattttttatgcctttactcaacaaagcagcctgaactgctgccccataagctacagcctcatcggggt 35132153  T
Q  101 taatgcccttgcacaactcctt------------gtcctgtaacagttgttgtacattgggaatcctagaagacccaccaacaaggacaacatcatctac 188  Q
    |||||| |||||||||||||||            ||  || || || || || || |||||||||||||||||||| |||||||| ||||||||||||||    
T  35132154 taatgctcttgcacaactccttccctttgaaaaagttttgcaatagctgctgcactttgggaatcctagaagaccctccaacaagaacaacatcatctac 35132253  T
Q  189 cct-gctcttgtccatcttagcatcaataagacaactttcaacaatcttcatacactccttaaaaaggtccatattcatttcctcaa 274  Q
    ||| |||||||||||||||||||||||| |||||||| || ||  | ||||||||||| |||||||||||   ||||||||||||||    
T  35132254 ccttgctcttgtccatcttagcatcaatgagacaactctctacggtattcatacactcattaaaaaggtctgcattcatttcctcaa 35132340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 14 - 274
Target Start/End: Original strand, 30774863 - 30775135
Alignment:
Q  14 gcagcaccaactttggaacattctgaatgccttcactcaacaatgcagcctgaacagctgcgccataagccacaacctcatcaggattaatgcccttgca 113  Q
    ||||||||||||||||  |||||| ||||||||||||||| |  |||||||| |||||||| || | ||| ||  ||||||||||||| |||| ||||||    
T  30774863 gcagcaccaactttggggcattcttaatgccttcactcaatagagcagcctggacagctgccccgtgagcaactgcctcatcaggattgatgctcttgca 30774962  T
Q  114 caactccttgtcct------------gtaacagttgttgtacattgggaatcctagaagacccaccaacaaggacaacatcatctaccctgctcttgtcc 201  Q
    ||| |||||  | |            | || ||||  || || ||||||||||||||||| ||||| ||||| |||| ||||||||| || ||||||||     
T  30774963 caaatccttcccattgaagaaattacgcaatagttcctgcactttgggaatcctagaagaaccaccgacaagaacaatatcatctacactactcttgtct 30775062  T
Q  202 atcttagcatcaataagacaactttcaacaatcttcatacactccttaaaaaggtccatattcatttcctcaa 274  Q
    | ||| | |||| |||||||||| |||||| |||  |||||||| ||||||||||||||||| ||||||||||    
T  30775063 acctttgaatcagtaagacaactctcaacagtctgtatacactcattaaaaaggtccatattgatttcctcaa 30775135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 399 - 484
Target Start/End: Original strand, 35132951 - 35133036
Alignment:
Q  399 caccggcagtgaccttgaatgaccataacaatatatcatcttgaacaacaggatcactaaacttcttaccaattaacctcttagca 484  Q
    ||||||||||||||||||||| ||||| || ||||||||||||||||| |||||||||||||||| ||||||||||||| ||||||    
T  35132951 caccggcagtgaccttgaatggccatagcagtatatcatcttgaacaataggatcactaaacttcctaccaattaaccttttagca 35133036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 277 - 349
Target Start/End: Original strand, 35132386 - 35132458
Alignment:
Q  277 aagaatctacttcaatagtggcgacaacaacgaaagaaagtgttcttttggccctctcacaagcagttctcaa 349  Q
    ||||||||||||||||| |||| ||||||| ||||||||||| ||| || |||||||  || |||||||||||    
T  35132386 aagaatctacttcaatattggcaacaacaaggaaagaaagtgatctctttgccctctagcaggcagttctcaa 35132458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 133 - 212
Target Start/End: Complemental strand, 23588159 - 23588080
Alignment:
Q  133 agttgttgtacattgggaatcctagaagacccaccaacaaggacaacatcatctaccctgctcttgtccatcttagcatc 212  Q
    |||||||| || |||||||||||||  || ||||||||||| ||||||||||  || ||| |||| ||||||||||||||    
T  23588159 agttgttgaaccttgggaatcctagtggatccaccaacaagaacaacatcatggacactgttcttatccatcttagcatc 23588080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 133 - 212
Target Start/End: Complemental strand, 23597011 - 23596932
Alignment:
Q  133 agttgttgtacattgggaatcctagaagacccaccaacaaggacaacatcatctaccctgctcttgtccatcttagcatc 212  Q
    |||||||| || |||||||||||||  || || |||||||| ||||||||||| || ||| |||| ||||||||||||||    
T  23597011 agttgttgaaccttgggaatcctagtcgatccgccaacaagaacaacatcatcaacactgttcttatccatcttagcatc 23596932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 410 - 484
Target Start/End: Complemental strand, 9335543 - 9335469
Alignment:
Q  410 accttgaatgaccataacaatatatcatcttgaacaacaggatcactaaacttcttaccaattaacctcttagca 484  Q
    |||||||||| ||| |||||||||||   |||||||||  |||||||||||||| ||||| |||| |||||||||    
T  9335543 accttgaatggccacaacaatatatctctttgaacaaccagatcactaaacttcctaccagttaatctcttagca 9335469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 410 - 484
Target Start/End: Original strand, 30775768 - 30775842
Alignment:
Q  410 accttgaatgaccataacaatatatcatcttgaacaacaggatcactaaacttcttaccaattaacctcttagca 484  Q
    |||||||||| ||| ||||| ||||| | |||||||||||| || ||||| ||| ||||||||||||| ||||||    
T  30775768 accttgaatggccacaacaaaatatctttttgaacaacagggtcgctaaatttcctaccaattaaccttttagca 30775842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 93; Significance: 8e-45; HSPs: 44)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 93; E-Value: 8e-45
Query Start/End: Original strand, 1 - 274
Target Start/End: Original strand, 6789110 - 6789395
Alignment:
Q  1 ggtgtaacatcctgcagcaccaactttggaacattctgaatgccttcactcaacaatgcagcctgaacagctgcgccataagccacaacctcatcaggat 100  Q
    ||||||||||| ||||||||||| ||||||||| ||| |  |||||| |||||||| |||||||| |||||||| || ||||| ||| |||||||||| |    
T  6789110 ggtgtaacatcttgcagcaccaagtttggaacactcttagagccttcgctcaacaaagcagcctggacagctgcaccgtaagcaacagcctcatcagggt 6789209  T
Q  101 taatgcccttgcacaactccttgtcc------------tgtaacagttgttgtacattgggaatcctagaagacccaccaacaaggacaacatcatctac 188  Q
    | |||| | ||||||| |||||  ||            || || |||||||| || |||||||| ||||||||||||||||||||||||||||||| |||    
T  6789210 tgatgctcatgcacaaatcctttcccatgaaaacttcttgcaatagttgttgcactttgggaattctagaagacccaccaacaaggacaacatcatttac 6789309  T
Q  189 cctgctcttgtccatcttagcatcaataagacaactttcaacaatcttcatacactccttaaaaaggtccatattcatttcctcaa 274  Q
      | ||||||||||||||||| |||| ||||||||| |||||  ||||||||||||| |||||||  |||||||| ||||||||||    
T  6789310 aatactcttgtccatcttagcgtcaacaagacaactctcaacggtcttcatacactcattaaaaatatccatattgatttcctcaa 6789395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 148 - 274
Target Start/End: Original strand, 17267696 - 17267822
Alignment:
Q  148 ggaatcctagaagacccaccaacaaggacaacatcatctaccctgctcttgtccatcttagcatcaataagacaactttcaacaatcttcatacactcct 247  Q
    |||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||| |||||||  | |||||||||| ||| ||||| |    
T  17267696 ggaatcctagaagacccaccaacaaggacaacatcatcaactctgctcttgtcaatcttagcatcactaagacacttctcaacaatctccatgcactcat 17267795  T
Q  248 taaaaaggtccatattcatttcctcaa 274  Q
     ||||||||||||||| ||||||||||    
T  17267796 caaaaaggtccatattgatttcctcaa 17267822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 18 - 274
Target Start/End: Complemental strand, 27831428 - 27831160
Alignment:
Q  18 caccaactttggaacattctgaatgccttcactcaacaatgcagcctgaacagctgcgccataagccacaacctcatcaggattaatgcccttgcacaac 117  Q
    |||||| ||||||||||||  |||| | ||||||||||| |||||||| |||||||| ||| |||| ||| ||||||||||||| |||| |||||||||     
T  27831428 caccaagtttggaacattcataatgtcatcactcaacaaagcagcctgcacagctgcaccaaaagcaacagcctcatcaggattgatgctcttgcacaaa 27831329  T
Q  118 tcctt------------gtcctgtaacagttgttgtacattgggaatcctagaagacccaccaacaaggacaacatcatctaccctgctcttgtccatct 205  Q
    |||||            ||||   || || || || || ||||||||||| ||||| |||||||||||||||||||||||||  || |||||||||||||    
T  27831328 tcctttcccttgaaaaagtccgccaatagctgctgcactttgggaatccttgaagagccaccaacaaggacaacatcatctatactactcttgtccatct 27831229  T
Q  206 tagcatcaataagacaactttcaacaatcttcatacactccttaaaaaggtccatattcatttcctcaa 274  Q
    |||  ||| | |||||||| |||||| ||| |||||| || || |||||||||||||| ||||||||||    
T  27831228 tagagtcagtgagacaactctcaacagtctccatacattcattgaaaaggtccatattgatttcctcaa 27831160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 18 - 274
Target Start/End: Original strand, 17259856 - 17260124
Alignment:
Q  18 caccaactttggaacattctgaatgccttcactcaacaatgcagcctgaacagctgcgccataagccacaacctcatcaggattaatgcccttgcacaac 117  Q
    |||||| |||||||||||||  | || | |||| ||||| |||||||||||||| || |||||||| ||| |||||||||| || |||| |||||| ||     
T  17259856 caccaagtttggaacattcttgacgcttccacttaacaaagcagcctgaacagcagcaccataagcaacagcctcatcagggttgatgctcttgcataat 17259955  T
Q  118 tccttg------------tcctgtaacagttgttgtacattgggaatcctagaagacccaccaacaaggacaacatcatctaccctgctcttgtccatct 205  Q
    |||||             ||||| || ||||| || || || |||||||||||||| ||||||||||||||||||||||| |  ||||||||||| ||||    
T  17259956 tccttacccttgaagaaatcctgcaatagttgctgcactttcggaatcctagaagatccaccaacaaggacaacatcatcaattctgctcttgtcaatct 17260055  T
Q  206 tagcatcaataagacaactttcaacaatcttcatacactccttaaaaaggtccatattcatttcctcaa 274  Q
    || ||||| |||||||  | |||||||||| ||| ||||| | ||||||||||||||| ||||| ||||    
T  17260056 taccatcactaagacacttctcaacaatctccatgcactcataaaaaaggtccatattgatttcttcaa 17260124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 1 - 274
Target Start/End: Original strand, 8575924 - 8576209
Alignment:
Q  1 ggtgtaacatcctgcagcaccaactttggaacattctgaatgccttcactcaacaatgcagcctgaacagctgcgccataagccacaacctcatcaggat 100  Q
    |||||||||||  | | |||||| ||||||||||||| | |||||||||||||||| ||||| || ||| | || |||||||| ||| |||||||||| |    
T  8575924 ggtgtaacatctcgtaacaccaagtttggaacattcttactgccttcactcaacaaagcagcttggacaacagcaccataagcaacagcctcatcagggt 8576023  T
Q  101 taatgcccttgcacaactccttg------------tcctgtaacagttgttgtacattgggaatcctagaagacccaccaacaaggacaacatcatctac 188  Q
    | |||| ||| || || |||||             |||||||| || |||   || || |||||||||||||| ||||||||||||||||||||||||||    
T  8576024 tgatgctcttacataattccttccccttgaaaacctcctgtaatagctgtctcactttaggaatcctagaagaaccaccaacaaggacaacatcatctac 8576123  T
Q  189 cctgctcttgtccatcttagcatcaataagacaactttcaacaatcttcatacactccttaaaaaggtccatattcatttcctcaa 274  Q
     ||  ||||||||||||||||||||  ||||||| | | |||| | ||||||||||  | ||| |||| |||||||||||||||||    
T  8576124 actattcttgtccatcttagcatcagcaagacaaatattaacagtattcatacacttttcaaagaggttcatattcatttcctcaa 8576209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 16 - 274
Target Start/End: Original strand, 8545246 - 8545516
Alignment:
Q  16 agcaccaactttggaacattctgaatgccttcactcaacaatgcagcctgaacagctgcgccataagccacaacctcatcaggattaatgcccttgcaca 115  Q
    |||||||  ||||| ||||||| | || ||||||||| ||| |||||||| |||||||| |||||||| ||| |||||||||| ||||||| |||||| |    
T  8545246 agcaccatgtttgggacattcttattgtcttcactcagcaaagcagcctggacagctgcaccataagcaacagcctcatcagggttaatgctcttgcata 8545345  T
Q  116 actccttg------------tcctgtaacagttgttgtacattgggaatcctagaagacccaccaacaaggacaacatcatctaccctgctcttgtccat 203  Q
    | |||||             |||||||| || |||   || || |||||||||||||| || ||||||||||||||||||||||| || | |||||||||    
T  8545346 attccttccccttaaaaaactcctgtaatagctgtctcactttaggaatcctagaagaaccgccaacaaggacaacatcatctacactacccttgtccat 8545445  T
Q  204 cttagcatcaataagacaactttcaacaatcttcatacactccttaaaaaggtccatattcatttcctcaa 274  Q
    ||||||||||| ||||||||  | |||| | | ||||||||  | ||| ||||||||||||| || |||||    
T  8545446 cttagcatcaacaagacaacaattaacagtgtccatacacttttcaaagaggtccatattcaattgctcaa 8545516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 148 - 274
Target Start/End: Original strand, 8570068 - 8570194
Alignment:
Q  148 ggaatcctagaagacccaccaacaaggacaacatcatctaccctgctcttgtccatcttagcatcaataagacaactttcaacaatcttcatacactcct 247  Q
    |||||||||||||| |||||||||||||||||||||||||| ||  |||| |||||||||||||||  ||||||||| | |||| | | ||||||||  |    
T  8570068 ggaatcctagaagaaccaccaacaaggacaacatcatctacactattcttttccatcttagcatcagcaagacaactattaacagtttccatacactttt 8570167  T
Q  248 taaaaaggtccatattcatttcctcaa 274  Q
     ||| |||| |||||||||||||||||    
T  8570168 caaagaggttcatattcatttcctcaa 8570194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 148 - 274
Target Start/End: Original strand, 8616438 - 8616564
Alignment:
Q  148 ggaatcctagaagacccaccaacaaggacaacatcatctaccctgctcttgtccatcttagcatcaataagacaactttcaacaatcttcatacactcct 247  Q
    ||||||||||| || ||||| ||||| |||| ||||||||| || ||||| || ||||||| |||| ||| |||||| |||||| |||| |||||||| |    
T  8616438 ggaatcctagacgagccaccgacaagaacaatatcatctacactactcttctctatcttagaatcattaaaacaactctcaacagtctttatacactcgt 8616537  T
Q  248 taaaaaggtccatattcatttcctcaa 274  Q
    |||||||||||||||| ||||||||||    
T  8616538 taaaaaggtccatattgatttcctcaa 8616564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 135 - 259
Target Start/End: Original strand, 8601718 - 8601842
Alignment:
Q  135 ttgttgtacattgggaatcctagaagacccaccaacaaggacaacatcatctaccctgctcttgtccatcttagcatcaataagacaactttcaacaatc 234  Q
    |||||| || ||||||||||||||||| || |||||||||||| ||||||| || || ||||| || |||| ||||||| ||||||||||||||||| ||    
T  8601718 ttgttgcactttgggaatcctagaagaaccgccaacaaggacagcatcatccacactactcttttcgatctgagcatcactaagacaactttcaacagtc 8601817  T
Q  235 ttcatacactccttaaaaaggtcca 259  Q
    |  ||||||| |||||| |||||||    
T  8601818 tctatacacttcttaaagaggtcca 8601842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 25 - 274
Target Start/End: Original strand, 8581322 - 8581583
Alignment:
Q  25 tttggaacattctgaatgccttcactcaacaatgcagcctgaacagctgcgccataagccacaacctcatcaggattaatgcccttgcacaactccttg- 123  Q
    ||||||||| ||| |||||||||||| | ||| |||||||||| ||| || |||||||| ||| |||||||||| || |||| |||||| || |||||      
T  8581322 tttggaacactcttaatgccttcactaaccaaagcagcctgaatagcagcaccataagcaacagcctcatcagggttgatgctcttgcataattccttcc 8581421  T
Q  124 -----------tcctgtaacagttgttgtacattgggaatcctagaagacccaccaacaaggacaacatcatctaccctgctcttgtccatcttagcatc 212  Q
               |||||||| || |||   || || |||||||||||||| |||||||||||||||||||||||||| || | | ||||||||||||||||    
T  8581422 cctggaaaaactcctgtaatagctgtctcactttaggaatcctagaagaaccaccaacaaggacaacatcatctacactacccctgtccatcttagcatc 8581521  T
Q  213 aataagacaactttcaacaatcttcatacactccttaaaaaggtccatattcatttcctcaa 274  Q
       ||||||||| | |||| | | ||||||||  | ||| |||| ||||||||||| |||||    
T  8581522 ggcaagacaactattaacagtgtccatacacttttcaaagaggttcatattcatttgctcaa 8581583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 410 - 484
Target Start/End: Complemental strand, 13333108 - 13333034
Alignment:
Q  410 accttgaatgaccataacaatatatcatcttgaacaacaggatcactaaacttcttaccaattaacctcttagca 484  Q
    |||||||||| ||| |||| |||||||| ||||||||| ||||||||||||||| ||||||||||||||||||||    
T  13333108 accttgaatggccacaacattatatcattttgaacaaccggatcactaaacttcctaccaattaacctcttagca 13333034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 408 - 484
Target Start/End: Original strand, 6790026 - 6790102
Alignment:
Q  408 tgaccttgaatgaccataacaatatatcatcttgaacaacaggatcactaaacttcttaccaattaacctcttagca 484  Q
    |||||||||||| ||| ||||  ||||||| ||||||||||| ||||||||||||| ||||||||||||||||||||    
T  6790026 tgaccttgaatggccaaaacatcatatcattttgaacaacagaatcactaaacttcctaccaattaacctcttagca 6790102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 145 - 263
Target Start/End: Complemental strand, 8383290 - 8383172
Alignment:
Q  145 ttgggaatcctagaagacccaccaacaaggacaacatcatctaccctgctcttgtccatcttagcatcaataagacaactttcaacaatcttcatacact 244  Q
    ||||||||||| ||||| ||||| |  || |||||||||||||| || ||||||| ||||||||||||| ||||||| || |||||| ||| ||||||||    
T  8383290 ttgggaatcctcgaagaaccaccgatgagaacaacatcatctacactactcttgttcatcttagcatcagtaagacagctctcaacagtctccatacact 8383191  T
Q  245 ccttaaaaaggtccatatt 263  Q
      | ||| |||||||||||    
T  8383190 tttcaaataggtccatatt 8383172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 410 - 480
Target Start/End: Complemental strand, 8585358 - 8585288
Alignment:
Q  410 accttgaatgaccataacaatatatcatcttgaacaacaggatcactaaacttcttaccaattaacctctt 480  Q
    |||||||||| ||| |||| |||||||| ||||||||| ||||||||||||||| ||||||||||||||||    
T  8585358 accttgaatggccacaacattatatcattttgaacaacgggatcactaaacttcctaccaattaacctctt 8585288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 145 - 211
Target Start/End: Original strand, 8590392 - 8590458
Alignment:
Q  145 ttgggaatcctagaagacccaccaacaaggacaacatcatctaccctgctcttgtccatcttagcat 211  Q
    ||||||||||||||||| ||||||||||| ||||||||||||||  || ||||||||||||||||||    
T  8590392 ttgggaatcctagaagaaccaccaacaagtacaacatcatctacaatgttcttgtccatcttagcat 8590458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 149 - 224
Target Start/End: Complemental strand, 7878143 - 7878068
Alignment:
Q  149 gaatcctagaagacccaccaacaaggacaacatcatctaccctgctcttgtccatcttagcatcaataagacaact 224  Q
    |||||||||| || ||||||||||| ||||||||||||||  || ||||||||||| |||||||| ||||||||||    
T  7878143 gaatcctagatgatccaccaacaagtacaacatcatctacattgttcttgtccatcatagcatcagtaagacaact 7878068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 139 - 274
Target Start/End: Complemental strand, 8586126 - 8585991
Alignment:
Q  139 tgtacattgggaatcctagaagacccaccaacaaggacaacatcatctaccctgctcttgtccatcttagcatcaataagacaactttcaacaatcttca 238  Q
    ||||| |||||||| || || || ||||| |||||||||| ||| ||||| |   |||| || ||||||| |||  |||||||||| |||||| | || |    
T  8586126 tgtactttgggaattctggacgagccaccgacaaggacaatatcgtctacaccattcttctctatcttagaatcggtaagacaactctcaacagtattta 8586027  T
Q  239 tacactccttaaaaaggtccatattcatttcctcaa 274  Q
    ||||||| ||||||||||||||||| ||||||||||    
T  8586026 tacactcattaaaaaggtccatattgatttcctcaa 8585991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 27 - 122
Target Start/End: Complemental strand, 29582385 - 29582290
Alignment:
Q  27 tggaacattctgaatgccttcactcaacaatgcagcctgaacagctgcgccataagccacaacctcatcaggattaatgcccttgcacaactcctt 122  Q
    ||||||||||| |||||||||| ||| ||| |||||||| |||||||| |||||||| ||| |||||||||| || |||| | ||||||| |||||    
T  29582385 tggaacattctcaatgccttcaatcagcaaagcagcctgcacagctgcaccataagcaacagcctcatcagggttgatgctcatgcacaaatcctt 29582290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 410 - 480
Target Start/End: Original strand, 8629048 - 8629118
Alignment:
Q  410 accttgaatgaccataacaatatatcatcttgaacaacaggatcactaaacttcttaccaattaacctctt 480  Q
    |||||||||| ||| ||||  ||||| | ||||||||||||||||||||||||| ||||||||||||||||    
T  8629048 accttgaatggccagaacatgatatccttttgaacaacaggatcactaaacttcctaccaattaacctctt 8629118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 410 - 484
Target Start/End: Original strand, 8667935 - 8668009
Alignment:
Q  410 accttgaatgaccataacaatatatcatcttgaacaacaggatcactaaacttcttaccaattaacctcttagca 484  Q
    |||||||||| ||| |||||||||||   ||||||||| || |||||||||||| ||||||||||||||||||||    
T  8667935 accttgaatggccacaacaatatatctctttgaacaacggggtcactaaacttcctaccaattaacctcttagca 8668009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 410 - 484
Target Start/End: Complemental strand, 10494026 - 10493952
Alignment:
Q  410 accttgaatgaccataacaatatatcatcttgaacaacaggatcactaaacttcttaccaattaacctcttagca 484  Q
    |||||||||| ||| |||| |||||| | ||||||||| ||||||||||||||| | ||||||||||||||||||    
T  10494026 accttgaatggccacaacattatatcgttttgaacaaccggatcactaaacttcctgccaattaacctcttagca 10493952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 116
Target Start/End: Complemental strand, 29578224 - 29578127
Alignment:
Q  19 accaactttggaacattctgaatgccttcactcaacaatgcagcctgaacagctgcgccataagccacaacctcatcaggattaatgcccttgcacaa 116  Q
    ||||| ||||||||||||| |||||| ||| ||||||| |||||||| |||||||| |||||||| ||| |||| ||||| || |||| | |||||||    
T  29578224 accaaatttggaacattcttaatgccatcaatcaacaaagcagcctgcacagctgcaccataagcaacagcctcgtcagggtttatgctcatgcacaa 29578127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 408 - 480
Target Start/End: Original strand, 3147786 - 3147858
Alignment:
Q  408 tgaccttgaatgaccataacaatatatcatcttgaacaacaggatcactaaacttcttaccaattaacctctt 480  Q
    |||||||||||| ||| ||||  ||||||| ||||||||||| ||||| ||||||| ||||||||||||||||    
T  3147786 tgaccttgaatggccacaacatcatatcattttgaacaacagaatcaccaaacttcctaccaattaacctctt 3147858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 145 - 244
Target Start/End: Original strand, 8537790 - 8537889
Alignment:
Q  145 ttgggaatcctagaagacccaccaacaaggacaacatcatctaccctgctcttgtccatcttagcatcaataagacaactttcaacaatcttcatacact 244  Q
    ||||||||||||||||| |||||||| || ||||||||||| |  || ||  ||||||||||||||||| ||| |||||| | |||| | ||||||||||    
T  8537790 ttgggaatcctagaagagccaccaactagtacaacatcatccatactactactgtccatcttagcatcattaaaacaactcttaacagttttcatacact 8537889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 215 - 274
Target Start/End: Original strand, 8659187 - 8659246
Alignment:
Q  215 taagacaactttcaacaatcttcatacactccttaaaaaggtccatattcatttcctcaa 274  Q
    |||||||||| |||||| | ||||||||||| |||||||| |||||||||||||||||||    
T  8659187 taagacaactctcaacagttttcatacactcattaaaaagatccatattcatttcctcaa 8659246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 130 - 212
Target Start/End: Original strand, 8102406 - 8102488
Alignment:
Q  130 aacagttgttgtacattgggaatcctagaagacccaccaacaaggacaacatcatctaccctgctcttgtccatcttagcatc 212  Q
    |||||||| || || |||||||||||||  || ||||||||||| ||||||||||  ||  ||||||||||||||||||||||    
T  8102406 aacagttgctgaactttgggaatcctagttgaaccaccaacaagaacaacatcatgaactgtgctcttgtccatcttagcatc 8102488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 25 - 111
Target Start/End: Complemental strand, 27846652 - 27846566
Alignment:
Q  25 tttggaacattctgaatgccttcactcaacaatgcagcctgaacagctgcgccataagccacaacctcatcaggattaatgcccttg 111  Q
    ||||||||||||| |||| | ||||||||||| |||||||| |||||||| ||| |||| ||| |||||||||| || |||| ||||    
T  27846652 tttggaacattcttaatgtcatcactcaacaaagcagcctgcacagctgctccaaaagcaacagcctcatcagggttgatgctcttg 27846566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 122 - 187
Target Start/End: Complemental strand, 8636780 - 8636715
Alignment:
Q  122 tgtcctgtaacagttgttgtacattgggaatcctagaagacccaccaacaaggacaacatcatcta 187  Q
    |||||||||| ||||| || || || ||||||||||| || |||||||||||||||||||||||||    
T  8636780 tgtcctgtaatagttgctgcacctttggaatcctagaggagccaccaacaaggacaacatcatcta 8636715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 410 - 475
Target Start/End: Complemental strand, 8671282 - 8671217
Alignment:
Q  410 accttgaatgaccataacaatatatcatcttgaacaacaggatcactaaacttcttaccaattaac 475  Q
    |||||||||| ||| |||||||||||   ||||||||| ||||||||||||||| |||||||||||    
T  8671282 accttgaatggccacaacaatatatctctttgaacaaccggatcactaaacttcctaccaattaac 8671217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 98
Target Start/End: Original strand, 3146867 - 3146959
Alignment:
Q  6 aacatcctgcagcaccaactttggaacattctgaatgccttcactcaacaatgcagcctgaacagctgcgccataagccacaacctcatcagg 98  Q
    |||||| |||| |||||| ||||||||||| | || | ||||||||||||| ||||| || |||||||| |||||||| ||  ||||||||||    
T  3146867 aacatcttgcaccaccaagtttggaacatttttaaagtcttcactcaacaaagcagcttgcacagctgcaccataagcaacggcctcatcagg 3146959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 501 - 565
Target Start/End: Complemental strand, 7876817 - 7876753
Alignment:
Q  501 gccatacagcaacacatgaatacgtagtacaaaggtctattcccacagcaagtccttcgtatttt 565  Q
    |||| ||||||||||| |||||||| || | ||||||||||||||| ||| ||||||||||||||    
T  7876817 gccacacagcaacacaggaatacgttgttccaaggtctattcccaccgcacgtccttcgtatttt 7876753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 148 - 244
Target Start/End: Original strand, 8609674 - 8609770
Alignment:
Q  148 ggaatcctagaagacccaccaacaaggacaacatcatctaccctgctcttgtccatcttagcatcaataagacaactttcaacaatcttcatacact 244  Q
    |||||||||||||| || |||||||| ||||||||||||||  |  |||| ||||| | ||||||| ||||||| ||||||||  ||| ||||||||    
T  8609674 ggaatcctagaagaacctccaacaagaacaacatcatctacggttttcttatccatttcagcatcagtaagacatctttcaaccgtctccatacact 8609770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 501 - 565
Target Start/End: Original strand, 8647820 - 8647884
Alignment:
Q  501 gccatacagcaacacatgaatacgtagtacaaaggtctattcccacagcaagtccttcgtatttt 565  Q
    |||| ||||||||||| |||||||| || | ||||||||||||||| ||||||||||||| ||||    
T  8647820 gccacacagcaacacacgaatacgttgttccaaggtctattcccactgcaagtccttcgtgtttt 8647884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 393 - 484
Target Start/End: Original strand, 8654949 - 8655040
Alignment:
Q  393 cattatcaccggcagtgaccttgaatgaccataacaatatatcatcttgaacaacaggatcactaaacttcttaccaattaacctcttagca 484  Q
    ||||| |||| | ||| ||| |||||| ||| ||||  ||||| | |||||||| |||||||||| ||||| ||||||||||||||||||||    
T  8654949 cattaacaccagaagtaaccatgaatggccacaacatgatatccttttgaacaataggatcactatacttcctaccaattaacctcttagca 8655040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 16 - 95
Target Start/End: Complemental strand, 10494929 - 10494850
Alignment:
Q  16 agcaccaactttggaacattctgaatgccttcactcaacaatgcagcctgaacagctgcgccataagccacaacctcatc 95  Q
    |||||||| || || ||||||| || |||||||||||| |  ||||||||||||||||| |||||||| ||| |||||||    
T  10494929 agcaccaagttcgggacattcttaaagccttcactcaaaatagcagcctgaacagctgcaccataagcaacagcctcatc 10494850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 106
Target Start/End: Original strand, 8590239 - 8590341
Alignment:
Q  4 gtaacatcctgcagcaccaactttggaacattctgaatgccttcactcaacaatgcagcctgaacagctgcgccataagccacaacctcatcaggattaa 103  Q
    |||||||| || |||||||| || |||||||||| ||| || ||||  | ||| ||||| ||||||||||| |||||||| ||| ||||||| ||||| |    
T  8590239 gtaacatcttgtagcaccaaattaggaacattcttaatcccatcacaaagcaaagcagcttgaacagctgcaccataagcaacagcctcatctggattga 8590338  T
Q  104 tgc 106  Q
    |||    
T  8590339 tgc 8590341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 399 - 484
Target Start/End: Original strand, 1301969 - 1302054
Alignment:
Q  399 caccggcagtgaccttgaatgaccataacaatatatcatcttgaacaacaggatcactaaacttcttaccaattaacctcttagca 484  Q
    |||||||  |||||||||||| ||| ||||  || || | ||||||||| | ||||||||||||| |||||||||| |||||||||    
T  1301969 caccggcgatgaccttgaatggccacaacatcatgtctttttgaacaactgaatcactaaacttcctaccaattaatctcttagca 1302054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 501 - 561
Target Start/End: Original strand, 1302430 - 1302490
Alignment:
Q  501 gccatacagcaacacatgaatacgtagtacaaaggtctattcccacagcaagtccttcgta 561  Q
    |||| ||||||||||| ||||| ||||| | |||||||||||| |||||| ||||||||||    
T  1302430 gccacacagcaacacacgaataagtagttccaaggtctattccaacagcacgtccttcgta 1302490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 98
Target Start/End: Original strand, 17267554 - 17267634
Alignment:
Q  18 caccaactttggaacattctgaatgccttcactcaacaatgcagcctgaacagctgcgccataagccacaacctcatcagg 98  Q
    |||||| |||||||||||||  | || | |||| ||||| |||||||||||||| || |||||||| ||| ||||||||||    
T  17267554 caccaagtttggaacattcttgacgcttccacttaacaaagcagcctgaacagcagcaccataagcaacagcctcatcagg 17267634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 408 - 484
Target Start/End: Original strand, 17268453 - 17268529
Alignment:
Q  408 tgaccttgaatgaccataacaatatatcatcttgaacaacaggatcactaaacttcttaccaattaacctcttagca 484  Q
    |||||||||||| |||  ||| |||||| | ||| || |||||||||||||||||| |||||||||  |||||||||    
T  17268453 tgaccttgaatggccacgacattatatctttttggaccacaggatcactaaacttcctaccaattagtctcttagca 17268529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 95
Target Start/End: Complemental strand, 13333923 - 13333844
Alignment:
Q  16 agcaccaactttggaacattctgaatgccttcactcaacaatgcagcctgaacagctgcgccataagccacaacctcatc 95  Q
    |||||||| || || ||| ||| || |||||||||||| |  ||||||||||||||||| |||||||| ||| |||||||    
T  13333923 agcaccaagttcgggacagtcttaaagccttcactcaaaatagcagcctgaacagctgcaccataagcaacagcctcatc 13333844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #42
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 501 - 567
Target Start/End: Original strand, 8655468 - 8655534
Alignment:
Q  501 gccatacagcaacacatgaatacgtagtacaaaggtctattcccacagcaagtccttcgtattttct 567  Q
    |||| ||||||||||||||||| || || |  ||||||||||| |||||| |||| |||||||||||    
T  8655468 gccacacagcaacacatgaataggttgttccgaggtctattccgacagcacgtccctcgtattttct 8655534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #43
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 501 - 563
Target Start/End: Original strand, 8668584 - 8668646
Alignment:
Q  501 gccatacagcaacacatgaatacgtagtacaaaggtctattcccacagcaagtccttcgtatt 563  Q
    |||| ||||||||||||||||| || || | ||| ||||||||||| ||| ||||||||||||    
T  8668584 gccacacagcaacacatgaataggttgttccaagatctattcccactgcacgtccttcgtatt 8668646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #44
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 493 - 522
Target Start/End: Original strand, 8610775 - 8610804
Alignment:
Q  493 ttgttcctgccatacagcaacacatgaata 522  Q
    ||||||||||||||||||||||||||||||    
T  8610775 ttgttcctgccatacagcaacacatgaata 8610804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 69; Significance: 2e-30; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 1 - 274
Target Start/End: Original strand, 43744414 - 43744699
Alignment:
Q  1 ggtgtaacatcctgcagcaccaactttggaacattctgaatgccttcactcaacaatgcagcctgaacagctgcgccataagccacaacctcatcaggat 100  Q
    |||| |||||| ||||||||||  |||||||| || | || ||||||||||||||| |||||||| |||||||| |||  ||| ||  |||||||||| |    
T  43744414 ggtgcaacatcttgcagcaccacgtttggaacttttttaaagccttcactcaacaaagcagcctgcacagctgcaccaatagcaactgcctcatcagggt 43744513  T
Q  101 taatgcccttgcacaactccttg------------tcctgtaacagttgttgtacattgggaatcctagaagacccaccaacaaggacaacatcatctac 188  Q
    |||||  ||| ||||| |||||             ||||| || ||||||||||| || ||||||||||| || ||||||||||| |||||||||| ||     
T  43744514 taatgttcttacacaaatccttccctgcaaaaaattcctgcaatagttgttgtacttttggaatcctagaggagccaccaacaagaacaacatcatgtat 43744613  T
Q  189 cctgctcttgtccatcttagcatcaataagacaactttcaacaatcttcatacactccttaaaaaggtccatattcatttcctcaa 274  Q
       ||||||||||||||| |||||| |||||||||| |||||||| |||| |||||| || || || |||||||| ||||||||||    
T  43744614 agcgctcttgtccatcttggcatcagtaagacaactctcaacaattttcaaacactcgttgaagagatccatattgatttcctcaa 43744699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 40 - 265
Target Start/End: Original strand, 12528141 - 12528378
Alignment:
Q  40 atgccttcactcaacaatgcagcctgaacagctgcgccataagccacaacctcatcaggattaatgcccttgcacaactccttg------------tcct 127  Q
    ||||||||||||||||| |||||||||||||| || |||||||| ||| |||||||||| || |||| |||| | |||||||||            ||||    
T  12528141 atgccttcactcaacaaagcagcctgaacagcggcaccataagcaacagcctcatcagggttgatgctcttgtataactccttgcccttgaaaaactcct 12528240  T
Q  128 gtaacagttgttgtacattgggaatcctagaagacccaccaacaaggacaacatcatctaccctgctcttgtccatcttagcatcaataagacaactttc 227  Q
    | || || || |  || |||||||||||||| || ||||||||||| |||| ||||||||| || ||||||||||||||||||||  | | |||||||||    
T  12528241 gcaatagctgcttcactttgggaatcctagacgagccaccaacaagtacaatatcatctacactactcttgtccatcttagcatcggtcaaacaactttc 12528340  T
Q  228 aacaatcttcatacactccttaaaaaggtccatattca 265  Q
    |||  ||| ||||||||  | ||| |||||||||||||    
T  12528341 aacggtctccatacacttttcaaagaggtccatattca 12528378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 431 - 484
Target Start/End: Original strand, 43745384 - 43745437
Alignment:
Q  431 atatcatcttgaacaacaggatcactaaacttcttaccaattaacctcttagca 484  Q
    ||||||| ||||||| ||| |||| |||||||| ||||||||||||||||||||    
T  43745384 atatcattttgaacatcagaatcattaaacttcctaccaattaacctcttagca 43745437  T

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Target: chr5 (Bit Score: 65; Significance: 4e-28; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 1 - 274
Target Start/End: Original strand, 28219516 - 28219801
Alignment:
Q  1 ggtgtaacatcctgcagcaccaactttggaacattctgaatgccttcactcaacaatgcagcctgaacagctgcgccataagccacaacctcatcaggat 100  Q
    ||||||||||| |||||||||||||| ||||| || | || ||||||||||||||| |||||||| |||||||| |||||||| ||| |||||||||| |    
T  28219516 ggtgtaacatcttgcagcaccaacttcggaacttttttaaagccttcactcaacaaagcagcctgcacagctgcaccataagcaacagcctcatcagggt 28219615  T
Q  101 taatgcccttgcacaactcctt------------gtcctgtaacagttgttgtacattgggaatcctagaagacccaccaacaaggacaacatcatctac 188  Q
    |||||| ||| ||||| |||||             ||||| |  ||||||||||| || ||||| ||||| || || |||||||| |||||||| | |||    
T  28219616 taatgctcttacacaattccttccctccaaaaaattcctgcagtagttgttgtacttttggaattctagaggagcctccaacaagaacaacatcgtgtac 28219715  T
Q  189 cctgctcttgtccatcttagcatcaataagacaactttcaacaatcttcatacactccttaaaaaggtccatattcatttcctcaa 274  Q
        ||||||||||| || |||||| | ||||| || |||||| | |||| |||||| || ||||| |||||||| ||||||||||    
T  28219716 agccctcttgtccatattggcatcagtgagacacctctcaacagttttcaaacactcattgaaaagatccatattgatttcctcaa 28219801  T

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Target: chr5; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 408 - 484
Target Start/End: Original strand, 28220465 - 28220541
Alignment:
Q  408 tgaccttgaatgaccataacaatatatcatcttgaacaacaggatcactaaacttcttaccaattaacctcttagca 484  Q
    |||||||||||| ||| |||  ||||||||||||||||||||  |||||||||||| ||||||||||||||||||||    
T  28220465 tgaccttgaatggccacaactttatatcatcttgaacaacagagtcactaaacttcctaccaattaacctcttagca 28220541  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 500 - 565
Target Start/End: Original strand, 28221065 - 28221130
Alignment:
Q  500 tgccatacagcaacacatgaatacgtagtacaaaggtctattcccacagcaagtccttcgtatttt 565  Q
    ||||| |||||||||||||||||||| || | ||| |||||||||||||||  ||||| |||||||    
T  28221065 tgccacacagcaacacatgaatacgttgttccaagatctattcccacagcacatccttggtatttt 28221130  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 439 - 484
Target Start/End: Original strand, 28911127 - 28911172
Alignment:
Q  439 ttgaacaacaggatcactaaacttcttaccaattaacctcttagca 484  Q
    ||||||||| ||||||||||||||| || |||||| ||||||||||    
T  28911127 ttgaacaacgggatcactaaacttcctatcaattatcctcttagca 28911172  T

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