View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10564_11 (Length: 311)
Name: NF10564_11
Description: NF10564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10564_11 |
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Alignment Details
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 16 - 291
Target Start/End: Original strand, 40404719 - 40404998
Alignment:
| Q |
16 |
atgaatgagcctgtcatttaatcatgttcaacaaatcatgtacagtgtatgtttcatgagttttacaaaccaagcaaaactgtnnnnnnnnntcttaatt |
115 |
Q |
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| T |
40404719 |
atgaatgagcctgtcatttaatcatgttcaacaaatcatgtacagtgtatgtttcatgagttttacaaaccaagcaaaactgtaaaaaaaaatcttaatt |
40404818 |
T |
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| Q |
116 |
aacatcacaaaataatatactcata----ctcaaaacatgaacttataacagtttctgtaaccattcttcgatgctcaaatctgtagtatcccataaaaa |
211 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40404819 |
aacatcacaaaataatatactcatacatactcaaaacatgaacttataacagtttctgtaaccattcttcgatgctcaaatctgtagtatcccataaaaa |
40404918 |
T |
|
| Q |
212 |
gctaccacaagagtaatatacactatctgtgcaaaatttgcaactccctttgaaaattgtgtgctctttgttgaaggaga |
291 |
Q |
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| T |
40404919 |
gttaccacaagagtaatataaactatctgtgcaaaatttacaactccctttgaaaattgtgtgctctttgttgaaggaga |
40404998 |
T |
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