View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10564_12 (Length: 307)
Name: NF10564_12
Description: NF10564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10564_12 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 13 - 307
Target Start/End: Original strand, 6229966 - 6230260
Alignment:
| Q |
13 |
aatattctgaagtgcttatcaagcattctcttgagaatgagttcagtgaagtatccaggttctgcaggcgacatatcttcgcccttatgggctctaaagc |
112 |
Q |
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| T |
6229966 |
aatattctgaagtgcttatcaagcattctcttgagaatgagttcagtgaagtatccaggttctgcaggcgacatatcttcgcccttatgggctctaaagc |
6230065 |
T |
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| Q |
113 |
ctcaaaaccgtgttgaaggaacggagttttgggacccgtatggcatctgtctggaatttggaaggagggatattggtccctacaagcatttatgtgcaat |
212 |
Q |
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| T |
6230066 |
ctcaaaaccgtgttgaaggaacagagttttgggacccgtatggcatctgtctggaatttggaaggagggatattggtccctacaagcatttatgtgcaat |
6230165 |
T |
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| Q |
213 |
tgatgctaaatctttcaatgcaaaacgaaccggaaatactttgtttttactgcaccggttgaagtatgtcatattttattcaacttagttgttac |
307 |
Q |
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| T |
6230166 |
tgatgctaaatctttcaatgcaaaacgaaccggaaatactttgtttttactgcaccggttgaagtatgtcatattttattcaacttagttgttac |
6230260 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 122 - 235
Target Start/End: Original strand, 33998104 - 33998217
Alignment:
| Q |
122 |
gtgttgaaggaacggagttttgggacccgtatggcatctgtctggaatttggaaggagggatattggtccctacaagcatttatgtgcaattgatgctaa |
221 |
Q |
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| T |
33998104 |
gtgttgaaggaacatagttatgggatccgtatggtataagtgtggagcttgaaaagagagacattggtccctacaagcatttaggtgcaattgatgctaa |
33998203 |
T |
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| Q |
222 |
atctttcaatgcaa |
235 |
Q |
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| T |
33998204 |
atctttcaatgcaa |
33998217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 11 - 54
Target Start/End: Complemental strand, 46640490 - 46640447
Alignment:
| Q |
11 |
agaatattctgaagtgcttatcaagcattctcttgagaatgagt |
54 |
Q |
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| T |
46640490 |
agaatattctgaagtgcttaactagcattctcttgagaatgagt |
46640447 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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