View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10564_2 (Length: 833)

Name: NF10564_2
Description: NF10564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10564_2
NF10564_2
[»] chr2 (1 HSPs)
chr2 (3-833)||(38724924-38725761)
[»] scaffold0176 (3 HSPs)
scaffold0176 (188-379)||(31971-32162)
scaffold0176 (492-582)||(31543-31633)
scaffold0176 (52-154)||(32333-32435)
[»] chr7 (8 HSPs)
chr7 (188-379)||(34165150-34165341)
chr7 (188-379)||(34171647-34171838)
chr7 (188-372)||(34215251-34215435)
chr7 (492-582)||(34164722-34164812)
chr7 (492-582)||(34171219-34171309)
chr7 (492-582)||(34214817-34214907)
chr7 (52-154)||(34165512-34165614)
chr7 (52-154)||(34172009-34172111)


Alignment Details
Target: chr2 (Bit Score: 755; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 755; E-Value: 0
Query Start/End: Original strand, 3 - 833
Target Start/End: Original strand, 38724924 - 38725761
Alignment:
Q  3 atgtccttgcttgcatttgcaagtgaagttcgttggggcgaaatcttcattggctctgcgaaggaattctcatccattataccggaggatgtaagcactg 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  38724924 atgtccttgcttgcatttgcaagtgaagttcgttggggcgaaatcttcattggctctgcgaaggaattctcatccattataccggaggatgtaagtactg 38725023  T
Q  103 ccattgatgaaccagatggttgcacatttgtacttaacccatttattgaaattcctaagttctgagaggcttttgcatagtttactacctttactcttag 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  38725024 ccattgatgaaccagatggttgcacatttgtacttaacccatttattgaaattcctaagttctgagaggcttttgcatagtttactacctttagtcttag 38725123  T
Q  203 ataatttttcccatcttgagaatttttatactgaattgcggatgcaacaactgaataaggagaattttggagagttgaattaagcaagagtgctccacta 302  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38725124 ataatttttcccatcttgagaatttttatactgaattgcggatgcaacaactgaataaggagaattttggagagttgaattaagcaagagtgctccacta 38725223  T
Q  303 gattcaacaaagaaggtttgcatcc----aataacttggagttccataattctgataagagttaaaaacaattgcgtctggccaccacgtccacgtcgcg 398  Q
    |||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38725224 gattcaacaaagaaggtttgcatccaattaataacttggagttccataattctgataagagttaaaaacaattgcgtctggccaccacgtccacgtcgcg 38725323  T
Q  399 ttagcttctttggtctttgttaagttcatgttaatgttcattaaaaggggtgcatatgaagccatgatgacgaggtcgctattcctctcaattccaataa 498  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38725324 ttagcttctttggtctttgttaagttcatgttaatgttcattaaaaggggtgcatatgaagccatgatgacgaggtcgctattcctctcaattccaataa 38725423  T
Q  499 ggaatgcagcttcggccacagctgcataaagacttccatgaccagcatcgtcacgccaaacagcatactcactaaca---aatgcctttggaccggatct 595  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||    
T  38725424 ggaatgcagcttcagccacagctgcataaagacttccatgaccagcatcgtcacgccaaacagcatactcactaacaaataatgcctttggaccggatct 38725523  T
Q  596 ctgctcctcctcaaacctggtattcctagaaaacatgtccggagaacttgtatagacatggtattcgtagatatctgccgggtgttttagtggatgttca 695  Q
    | |  |||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  38725524 cggggccttatcaaacctggtattcctagaaaacatgtccggagaacttgtatagacatggtattcgtagatatctgctgggtgttttagtggatgttca 38725623  T
Q  696 gaactgtcgcagtttgagataatttgaatatcaggataagtactttttatagcttcgtaaaatttcatgtaatttccttcatagtactgcataccacaat 795  Q
    |||| || ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38725624 gaaccgttgcagtttgagataatttgaatatcaggataagtacgttttatagcttcgtaaaatttcatgtaatttccttcatagtactgcataccacaat 38725723  T
Q  796 cttcatttccaatagcaacaaatttcaaattaaatggt 833  Q
    |||||||||||||||||||||||||||||||| |||||    
T  38725724 cttcatttccaatagcaacaaatttcaaattacatggt 38725761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0176 (Bit Score: 117; Significance: 4e-59; HSPs: 3)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 117; E-Value: 4e-59
Query Start/End: Original strand, 188 - 379
Target Start/End: Complemental strand, 32162 - 31971
Alignment:
Q  188 tacctttactcttagataatttttcccatcttgagaatttttatactgaattgcggatgcaacaactgaataaggagaattttggagagttgaattaagc 287  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |||   || ||||||||| |||||||||||||||    
T  32162 tacctttactcttagataattcttcccatcttgagaatttttatactcaattgcggatgcaacaattgagctagaagaattttgaagagttgaattaagc 32063  T
Q  288 aagagtgctccactagattcaacaaagaaggtttgcatccaataacttggagttccataattctgataagagttaaaaacaattgcgtctgg 379  Q
    ||   ||||||||||||||||| |||||    ||| | |||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  32062 aatgttgctccactagattcaataaagagntgttgtagccaataacttggagttccataattctgataagagttaaaaacaattgcatctgg 31971  T

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Target: scaffold0176; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 492 - 582
Target Start/End: Complemental strand, 31633 - 31543
Alignment:
Q  492 ccaataaggaatgcagcttcggccacagctgcataaagacttccatgaccagcatcgtcacgccaaacagcatactcactaacaaatgcct 582  Q
    ||||| || ||||||||||| || |||||||||||||| ||||||  ||||||||| ||   |||||||||||||||||||||||||||||    
T  31633 ccaatgagaaatgcagcttcagcaacagctgcataaaggcttccagcaccagcatcttccttccaaacagcatactcactaacaaatgcct 31543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0176; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 52 - 154
Target Start/End: Complemental strand, 32435 - 32333
Alignment:
Q  52 ttggctctgcgaaggaattctcatccattataccggaggatgtaagcactgccattgatgaaccagatggttgcacatttgtacttaacccatttattga 151  Q
    ||||||| | ||||||||||||||||||| ||  |||||| ||||||||  |||||||||||  ||| | ||| ||| ||| | |||| |||||||||||    
T  32435 ttggctccgagaaggaattctcatccattctattggaggacgtaagcaccaccattgatgaattagacgattgaacaattgaatttaaaccatttattga 32336  T
Q  152 aat 154  Q
    |||    
T  32335 aat 32333  T

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Target: chr7 (Bit Score: 116; Significance: 1e-58; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 188 - 379
Target Start/End: Complemental strand, 34165341 - 34165150
Alignment:
Q  188 tacctttactcttagataatttttcccatcttgagaatttttatactgaattgcggatgcaacaactgaataaggagaattttggagagttgaattaagc 287  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |||   || ||||||||| |||||||||||||||    
T  34165341 tacctttactcttagataattcttcccatcttgagaatttttatactcaattgcggatgcaacaattgagctagaagaattttgaagagttgaattaagc 34165242  T
Q  288 aagagtgctccactagattcaacaaagaaggtttgcatccaataacttggagttccataattctgataagagttaaaaacaattgcgtctgg 379  Q
    ||   ||||||||||||||||| |||||    ||| | |||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  34165241 aatgttgctccactagattcaataaagagttgttgtagccaataacttggagttccataattctgataagagttaaaaacaattgcatctgg 34165150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 188 - 379
Target Start/End: Complemental strand, 34171838 - 34171647
Alignment:
Q  188 tacctttactcttagataatttttcccatcttgagaatttttatactgaattgcggatgcaacaactgaataaggagaattttggagagttgaattaagc 287  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |||   || ||||||||| |||||||||||||||    
T  34171838 tacctttactcttagataattcttcccatcttgagaatttttatactcaattgcggatgcaacaattgagctagaagaattttgaagagttgaattaagc 34171739  T
Q  288 aagagtgctccactagattcaacaaagaaggtttgcatccaataacttggagttccataattctgataagagttaaaaacaattgcgtctgg 379  Q
    ||   ||||||||||||||||| |||||    ||| | |||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  34171738 aatgttgctccactagattcaataaagagttgttgtagccaataacttggagttccataattctgataagagttaaaaacaattgcatctgg 34171647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 113; E-Value: 9e-57
Query Start/End: Original strand, 188 - 372
Target Start/End: Complemental strand, 34215435 - 34215251
Alignment:
Q  188 tacctttactcttagataatttttcccatcttgagaatttttatactgaattgcggatgcaacaactgaataaggagaattttggagagttgaattaagc 287  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |||   || ||||||||| |||||||||||||||    
T  34215435 tacctttactcttagataattcttcccatcttgagaatttttatactcaattgcggatgcaacaattgagctagaagaattttgaagagttgaattaagc 34215336  T
Q  288 aagagtgctccactagattcaacaaagaaggtttgcatccaataacttggagttccataattctgataagagttaaaaacaattg 372  Q
    ||   ||||||||||||||||| |||||    ||| | |||||||||||||||||||||||||||||||||||||||||||||||    
T  34215335 aatgttgctccactagattcaataaagagttgttgtagccaataacttggagttccataattctgataagagttaaaaacaattg 34215251  T

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Target: chr7; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 492 - 582
Target Start/End: Complemental strand, 34164812 - 34164722
Alignment:
Q  492 ccaataaggaatgcagcttcggccacagctgcataaagacttccatgaccagcatcgtcacgccaaacagcatactcactaacaaatgcct 582  Q
    ||||| || ||||||||||| || |||||||||||||| ||||||  ||||||||| ||   |||||||||||||||||||||||||||||    
T  34164812 ccaatgagaaatgcagcttcagcaacagctgcataaaggcttccagcaccagcatcttccttccaaacagcatactcactaacaaatgcct 34164722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 492 - 582
Target Start/End: Complemental strand, 34171309 - 34171219
Alignment:
Q  492 ccaataaggaatgcagcttcggccacagctgcataaagacttccatgaccagcatcgtcacgccaaacagcatactcactaacaaatgcct 582  Q
    ||||| || ||||||||||| || |||||||||||||| ||||||  ||||||||| ||   |||||||||||||||||||||||||||||    
T  34171309 ccaatgagaaatgcagcttcagcaacagctgcataaaggcttccagcaccagcatcttccttccaaacagcatactcactaacaaatgcct 34171219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 492 - 582
Target Start/End: Complemental strand, 34214907 - 34214817
Alignment:
Q  492 ccaataaggaatgcagcttcggccacagctgcataaagacttccatgaccagcatcgtcacgccaaacagcatactcactaacaaatgcct 582  Q
    ||||| || ||||||||||| || |||||||||||||| ||||||  ||||||||| ||   |||||||||||||||||||||||||||||    
T  34214907 ccaatgagaaatgcagcttcagcaacagctgcataaaggcttccagcaccagcatcttccttccaaacagcatactcactaacaaatgcct 34214817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 52 - 154
Target Start/End: Complemental strand, 34165614 - 34165512
Alignment:
Q  52 ttggctctgcgaaggaattctcatccattataccggaggatgtaagcactgccattgatgaaccagatggttgcacatttgtacttaacccatttattga 151  Q
    ||||||| | ||||||||||||||||||| ||  |||||| ||||||||  |||||||||||  ||| | ||| ||| ||| | |||| |||||||||||    
T  34165614 ttggctccgagaaggaattctcatccattctattggaggacgtaagcaccaccattgatgaattagacgattgaacaattgaatttaaaccatttattga 34165515  T
Q  152 aat 154  Q
    |||    
T  34165514 aat 34165512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 52 - 154
Target Start/End: Complemental strand, 34172111 - 34172009
Alignment:
Q  52 ttggctctgcgaaggaattctcatccattataccggaggatgtaagcactgccattgatgaaccagatggttgcacatttgtacttaacccatttattga 151  Q
    ||||||| | ||||||||||||||||||| ||  |||||| ||||| ||  |||||||||||  ||| | ||| ||| ||| | |||| |||||||||||    
T  34172111 ttggctccgagaaggaattctcatccattctattggaggacgtaagtaccaccattgatgaattagacgattgaacaattgaatttaaaccatttattga 34172012  T
Q  152 aat 154  Q
    |||    
T  34172011 aat 34172009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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