View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10564_5 (Length: 459)
Name: NF10564_5
Description: NF10564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10564_5 |
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Alignment Details
Target: chr2 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 433
Target Start/End: Complemental strand, 2784054 - 2783600
Alignment:
| Q |
1 |
cagccacatgtatatccttcgtactctcatagcattaaatcaccaataaatgtacatttttcctaccttaattttgcatnnnnnnnnnnnnnntttccca |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
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| T |
2784054 |
cagccacatgtatatccttcgtactctcatagcattaaatcaccaataaatgtacatttttcctaccttaattttgcgtaaaaaaataaaaa-tttccca |
2783956 |
T |
|
| Q |
101 |
cctt-------ataatgtgataagaaaaaacaaatatgaaatgtgcannnnnnnnnnnncatgtctttagctaaattgataccgattatgccaccttctt |
193 |
Q |
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|||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
2783955 |
ccttttaagttataatgtgataagaaaaaacaaatatgaaatgtgcatttttattttttcatgtctttagctaaattgataccgattatgccaccttctt |
2783856 |
T |
|
| Q |
194 |
cgacaatgcaataaaaacgaccataaatttgtagttgtatagatgtgacaatgacggtcatcattgaagttttagacaatttataaatggtgaatcaatt |
293 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
2783855 |
cgacaatgcaataaaaacgaccataaatttgtagttgtatagatgtgacaatgacggtcatcattgaagttttagacaatttataaatgatgaatcaatt |
2783756 |
T |
|
| Q |
294 |
atcaagatagtttcttgtagaagtatgatctccaaataaatcatac-------------------taatttcca-ccccaccctctttcttgattccttc |
373 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| ||||||||||||| |
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| T |
2783755 |
atcaagatggtttcttgtagaagtatgatctccaaataaatcataccacatagttattgcaaatttaatttccacccccaccc----tcttgattccttc |
2783660 |
T |
|
| Q |
374 |
aaatctcgataacaaatttgatactaattaagtttaacatatgcttatggaaggcacgtg |
433 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2783659 |
aaatctcgataacaaatttgatactaattaagtttaacatatgcttatggaaggcacgtg |
2783600 |
T |
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