View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10564_6 (Length: 384)
Name: NF10564_6
Description: NF10564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10564_6 |
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Alignment Details
Target: chr3 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 9 - 378
Target Start/End: Complemental strand, 29814596 - 29814224
Alignment:
| Q |
9 |
gaagaatatgttatgtggatggaggtggtggccggaatctgaggtggaggtggttgcgtgtttggatgaaaa-tgttgctaataagcttttagattagtt |
107 |
Q |
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| T |
29814596 |
gaagaaaatgttatgtggatggaggtggtggccggaatttgagatggaggtggttgcgtgtttggatgaaaaatgttgctaataagcttttagattagtt |
29814497 |
T |
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| Q |
108 |
tttctcctttcaccggatttaaacacataaccttcaactctttatccttcaactcaaatcagttagctaccca-ctccccataagcttgaggtgagttga |
206 |
Q |
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||||||||||||||| ||||||| |||||| ||||||||||||||| ||||||||||||||||||||| ||| |||| ||||||||||||||||||||| |
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| T |
29814496 |
tttctcctttcaccgcatttaaatccataactttcaactctttatccctcaactcaaatcagttagctatccaactcctcataagcttgaggtgagttga |
29814397 |
T |
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| Q |
207 |
gaggttaaaatgatatgtaccttgagaggttgtgaagggtcattatatatagacgtcgaggaagccattgtgt-ttaaaggggagccgttacaacgacgt |
305 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |
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| T |
29814396 |
gaggttaaaatgatatgtaccttgagaggttgtgaagggtcattatatatagacgtcgaggaagccattgtgtattaaatgggagccgttacaacgacgt |
29814297 |
T |
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| Q |
306 |
tcatgaatgtcgtcaccggtagcttataagccgtcgatccattatgtgtcggagaagatctgaggtttgaaag |
378 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29814296 |
tcatgaatgtcgtcaccggtagcttataagccgtcgatccattatgtgtcggagaagatctgaggtttgaaag |
29814224 |
T |
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