View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10564_7 (Length: 383)
Name: NF10564_7
Description: NF10564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10564_7 |
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| [»] chr2 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 30 - 383
Target Start/End: Complemental strand, 3215311 - 3214959
Alignment:
| Q |
30 |
cttcgcatgcgtataaactctagaacaaacttgtgacctattttcaaaagcagatgcttgcaaaggcaagacaacattcgtgttgaattgcgcgctacct |
129 |
Q |
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| T |
3215311 |
cttcgcatgcgtataaactctagaacaaacttgtgacctattttcaaaagcaaatgcttgcaaaggcaagacaac-ttcgtgttgaattgcgtgctacct |
3215213 |
T |
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| Q |
130 |
cgtttgataatcgtacggtacaagagtatctcattcgtactcgcaatcttatagacagtcttgcttcaattgatgatccaattcctgtcaatcagcactt |
229 |
Q |
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| T |
3215212 |
cgtttgataatcgtacggtgcaagagtatctcattcatactcgcaatcttatagacaatcttgcttcaattgatgatccaattcctgtcaatcagcactt |
3215113 |
T |
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| Q |
230 |
agatgttattttggaaggtttaccacatggatatagtccagttatctctgttgttgagagtaagtttgatgttattgacatagatgaggttgaatctctg |
329 |
Q |
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| T |
3215112 |
agatgttattttggaaggtttaccacatggttatagtccagttatctctgttgttgagagtaagtttgatgttattgacatagatgaggttgaatctctg |
3215013 |
T |
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| Q |
330 |
ctaattgctcatgaaactcgtcttgacaagttcaagaagaaaactcttgatgat |
383 |
Q |
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| T |
3215012 |
ctaattgctcatgaaactcgtcttgacaagttcaagaagaaaactcttgatgat |
3214959 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 111; Significance: 6e-56; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 30 - 383
Target Start/End: Complemental strand, 32460826 - 32460473
Alignment:
| Q |
30 |
cttcgcatgcgtataaactctagaacaaacttgtgacctattttcaaaagcagatgcttgcaaaggcaagacaacattcgtgttgaattgcgcgctacct |
129 |
Q |
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| T |
32460826 |
cttcgcatgcgtatgaacttcggaacaaacttgtgacctattttcacaagcagatgcgtgcaaaggcaaggcagt-tacgtgttgaactgcgttctactt |
32460728 |
T |
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| Q |
130 |
cgtttgataatcgtacggtacaagagtatctcattcgtactcgcaatcttatagacagtcttgctt-caattgatgatccaattcctgtcaatcagcact |
228 |
Q |
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| T |
32460727 |
ctcttgataatcgtacggtacaggagcatcttcttcgcattcgcaatttaattgataatcttgctttccattggtgatccagttcccattactcagcatt |
32460628 |
T |
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| Q |
229 |
tagatgttattttggaaggtttaccacatggatatagtccagttatctctgttgttgagagtaagtttgatgttattgacatagatgaggttgaatctct |
328 |
Q |
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| T |
32460627 |
tagatgtaattttagaaggtttaccacaagagtatagtccagtgatttcagttgttgaaagcaaatttgacactattgatattgatgaggtagagtctct |
32460528 |
T |
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| Q |
329 |
gctaattgctcatgaaactcgtcttgacaagttcaagaagaaaactcttgatgat |
383 |
Q |
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| T |
32460527 |
gttaattgctcatgagactcgtcttgacaagttcaagaagaagactattgatgat |
32460473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 204 - 367
Target Start/End: Complemental strand, 36399611 - 36399448
Alignment:
| Q |
204 |
gatccaattcctgtcaatcagcacttagatgttattttggaaggtttaccacatggatatagtccagttatctctgttgttgagagtaagtttgatgtta |
303 |
Q |
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|||||| ||||||| ||||| || || ||||| ||||| ||||||||||| || | | |||||| ||||| ||||| || || || || |||||||||| |
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| T |
36399611 |
gatccagttcctgttaatcaacatttggatgtgattttagaaggtttaccgcaagattttagtcctgttatatctgtagtggaaagcaaatttgatgtta |
36399512 |
T |
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| Q |
304 |
ttgacatagatgaggttgaatctctgctaattgctcatgaaactcgtcttgacaagttcaagaa |
367 |
Q |
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| T |
36399511 |
ttgacgttgacgaagttgagtctcttcttcttgctcatgaaacacgtcttgataaattcaagaa |
36399448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 294 - 367
Target Start/End: Complemental strand, 52665923 - 52665850
Alignment:
| Q |
294 |
tttgatgttattgacatagatgaggttgaatctctgctaattgctcatgaaactcgtcttgacaagttcaagaa |
367 |
Q |
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| T |
52665923 |
tttgatgttattgacattgacgaagttgagtctcttcttcttgctcatgaaacacgtcttgataaattcaagaa |
52665850 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 367
Target Start/End: Complemental strand, 24789452 - 24789296
Alignment:
| Q |
211 |
ttcctgtcaatcagcacttagatgttattttggaaggtttaccacatggatatagtccagttatctctgttgttgagagtaagtttgatgttattgacat |
310 |
Q |
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| T |
24789452 |
ttcctgttaatcaacatttggatgtgattttagaaggtttaccacaagattttagtcctattatatttgtagtggaaagcaaatttgatgttattgacgt |
24789353 |
T |
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| Q |
311 |
agatgaggttgaatctctgctaattgctcatgaaactcgtcttgacaagttcaagaa |
367 |
Q |
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| T |
24789352 |
tgacgaagttgagtctcttcttcttactcatgaaacacgtcttgataaattcaagaa |
24789296 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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