View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10564_8 (Length: 379)
Name: NF10564_8
Description: NF10564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10564_8 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 321; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 1 - 379
Target Start/End: Complemental strand, 31201672 - 31201276
Alignment:
| Q |
1 |
tgataaactactgagatgattatatatagatgtttgtttcaattgctttaaatttttgagaattttaaagtatttgattgatgtaaacattaaacaatga |
100 |
Q |
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| T |
31201672 |
tgataaactactgagatgattatatatagatgtttgtttcaattgctttaaatttttgagaatttaaaagtatttgattgatgcaaacattaaacaatga |
31201573 |
T |
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| Q |
101 |
aactggtattctcaa-----------------accatgataatgagatcttggtttttt-gtagtaatatagttcttccaaatattgtttttcagcaaag |
182 |
Q |
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| T |
31201572 |
aactggtattctcaaggatgaaaaaggaacacaccatgataatgagatcttggtttttttgtagtaatatagttcttccaaatattgtttttcagcaaag |
31201473 |
T |
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| Q |
183 |
gagtgttctatttagttacatgaacttattataatttttgaacaatttgcagttttccattacaaccacatagaagacaacaaacttataatcacaatga |
282 |
Q |
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| T |
31201472 |
gagtgttctatttagttacatgaacttattataatttttgaacaatttgcagttttccattacaaccacatagaagacaacaaacttataatcacaatga |
31201373 |
T |
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| Q |
283 |
ggacatgagaagaaggggctacaaccccacaagaatcagagagatgttccagcattcaccttcaaggtcaacatcaacacagcaaacaaacactcga |
379 |
Q |
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| T |
31201372 |
ggacatgagaagaaggggctacaaccccacaagaatcagagagattttccagcattcaccttcaaggtcaacatcaacacagcaaacaaacactcga |
31201276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 116 - 316
Target Start/End: Complemental strand, 31214079 - 31213883
Alignment:
| Q |
116 |
accatgataatgagatcttggttttttgtagta---atatagttcttccaaatattgtttttcagc-----aaaggagtgttctatttagttacatgaac |
207 |
Q |
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| T |
31214079 |
accatgataatgagatcttgattttttgtagtactaatatatttcttccaaatattgtttttcagcaaattaaaggagtgttctatttagttacat-aaa |
31213981 |
T |
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| Q |
208 |
ttattataatttttgaacaatttgcagttttccattacaaccacatagaagacaacaaacttataatcacaatgaggacatgagaagaaggggctacaac |
307 |
Q |
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| T |
31213980 |
ttattataattttt-aacaatttgcagttttccagtacaacc----------ccacaaacttataatcacaatgaggatatgagaagaaggggtttcaac |
31213892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 4 - 65
Target Start/End: Complemental strand, 31214372 - 31214311
Alignment:
| Q |
4 |
taaactactgagatgattatatatagatgtttgtttcaattgctttaaatttttgagaattt |
65 |
Q |
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| T |
31214372 |
taaactactgagatgattatatatagatgtttgtttcaattgatttaaattttagagaattt |
31214311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 116 - 375
Target Start/End: Complemental strand, 13605666 - 13605409
Alignment:
| Q |
116 |
accatgataatgagatcttggttttttgtagtaatatagttcttccaaatattgtttttcagcaaaggagtgttctatttagttacatgaacttattata |
215 |
Q |
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| T |
13605666 |
accatgataatgagatctcgattttttatagtaatatcgttcctccaaatattgtttttcagcaaaggagcgttctatttaattacatgaacttattata |
13605567 |
T |
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| Q |
216 |
atttttgaacaatttgcagttttccattacaaccacatagaagacaacaaacttataatcacaatgaggacatgagaagaaggggctacaaccccacaag |
315 |
Q |
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| T |
13605566 |
atttttgaataatttgcagttttccattacaaccacatagaagacaacaaacttataatcacaatgagaacatgagaagaagggctttcaaccccacaag |
13605467 |
T |
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| Q |
316 |
aatcagagagatgttccagcattcaccttcaaggtcaacatcaacacagcaaacaaacac |
375 |
Q |
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| T |
13605466 |
actc--agaaattttccagcattcatcttcaaggtcaacatcaacacagcaaacaaacac |
13605409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 13605854 - 13605773
Alignment:
| Q |
1 |
tgataaactactgagatgattatatatagatgtttgtttcaattgctttaaatttttgagaattttaaagtatttgattgat |
82 |
Q |
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| T |
13605854 |
tgataaactaatgagatgaatatatatagatgtttgtttcaattgctttaaattttagagaatttaaaagtatttgattgat |
13605773 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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