View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10565_high_10 (Length: 312)
Name: NF10565_high_10
Description: NF10565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10565_high_10 |
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Alignment Details
Target: chr6 (Bit Score: 276; Significance: 1e-154; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 13 - 304
Target Start/End: Complemental strand, 2366289 - 2365998
Alignment:
| Q |
13 |
aataagaaccattgggtgcaaacccaagaaaagctccattgtaagtcatatgtttatatgcttcacctttaggacgagtggatattgccaagtcaatttt |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
2366289 |
aataagaaccattgggtgcaaacccaagaaaagctccattgtaagtcatatgtttatatgcttcacctttagggcgagtggatattgccaagtcaatttt |
2366190 |
T |
|
| Q |
113 |
ggtgaaacattcctttgccatttcccaattgctaagaaccaaagcacgtttggaaccaatcttaatagtgaacaagggtccatatttatcagccaatgca |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2366189 |
ggtgaaacattcctttgccatttcccaattgctaagaaccaaagcacgtttggaaccaatcttaatagtgaacaagggtccatatttatcagccaatgca |
2366090 |
T |
|
| Q |
213 |
cctaaagttctatgaggtgattgtgaagatcttaatagtgggaggtgaccaagtattggccatgccccttgaactataggagcctctctgct |
304 |
Q |
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| T |
2366089 |
cctaaggttctatgaggtgattgtgaagatcttaatagtgggaggtgaccaagtattggccatgccccttgaactataggatcctctttgct |
2365998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 71 - 304
Target Start/End: Complemental strand, 2361627 - 2361394
Alignment:
| Q |
71 |
tgcttcacctttaggacgagtggatattgccaagtcaattttggtgaaacattcctttgccatttcccaattgctaagaaccaaagcacgtttggaacca |
170 |
Q |
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||||||| |||||| ||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
2361627 |
tgcttcaagtttagggcgattggatattgccaagtcaatttttgtgaaacattcctttgccatttcccaattgctaacaaccaaagcacgtttggaacca |
2361528 |
T |
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| Q |
171 |
atcttaatagtgaacaagggtccatatttatcagccaatgcacctaaagttctatgaggtgattgtgaagatcttaatagtgggaggtgaccaagtattg |
270 |
Q |
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| T |
2361527 |
agcttaatagtgaacaagggtccatatttatcagccaatgcacctaaggttctatgaggtttttgtgaattttttaatagttgtaggtgaccaagtattg |
2361428 |
T |
|
| Q |
271 |
gccatgccccttgaactataggagcctctctgct |
304 |
Q |
| |
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||||||||||||||||||||||||||||| |||| |
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| T |
2361427 |
gccatgccccttgaactataggagcctctttgct |
2361394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 80 - 277
Target Start/End: Complemental strand, 2355935 - 2355738
Alignment:
| Q |
80 |
tttaggacgagtggatattgccaagtcaattttggtgaaacattcctttgccatttcccaattgctaagaaccaaagcacgtttggaaccaatcttaata |
179 |
Q |
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||||||||||||||| ||||| | ||||| |||||||||||||||||| ||||||||| |||||||||| ||||||||| ||||||||||| || || |
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| T |
2355935 |
tttaggacgagtggaaattgcaacgtcaaatttggtgaaacattccttcgccatttccgaattgctaagtaccaaagcatttttggaaccaagtttgatg |
2355836 |
T |
|
| Q |
180 |
gtgaacaagggtccatatttatcagccaatgcacctaaagttctatgaggtgattgtgaagatcttaatagtgggaggtgaccaagtattggccatgc |
277 |
Q |
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|||||||||||||||||||||||||| || |||||||||||||||| |||| || |||| |||| | ||||||||||||||||||||||||||| |
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| T |
2355835 |
gtgaacaagggtccatatttatcagctaaatcacctaaagttctatgtggtgctttggaagcctttaacaatgggaggtgaccaagtattggccatgc |
2355738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 117 - 282
Target Start/End: Complemental strand, 2305877 - 2305712
Alignment:
| Q |
117 |
aaacattcctttgccatttcccaattgctaagaaccaaagcacgtttggaaccaatcttaatagtgaacaagggtccatatttatcagccaatgcaccta |
216 |
Q |
| |
|
||||||||||| ||||||||||||||| | |||| ||||||||||| ||||||| ||| || ||||| || ||||||||||||||||| || | ||||| |
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| T |
2305877 |
aaacattccttggccatttcccaattgttgagaattaaagcacgtttagaaccaagcttgatggtgaataatggtccatatttatcagctaaggtaccta |
2305778 |
T |
|
| Q |
217 |
aagttctatgaggtgattgtgaagatcttaatagtgggaggtgaccaagtattggccatgcccctt |
282 |
Q |
| |
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| ||||| |||||||||| || || |||| |||||||||||||||||||||||| |||| |
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| T |
2305777 |
agaccctatggggtgattgtgtgccactaaaaagtgagaggtgaccaagtattggccatgcacctt |
2305712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 114 - 282
Target Start/End: Complemental strand, 2349250 - 2349082
Alignment:
| Q |
114 |
gtgaaacattcctttgccatttcccaattgctaagaaccaaagcacgtttggaaccaatcttaatagtgaacaagggtccatatttatcagccaatgcac |
213 |
Q |
| |
|
|||||||||||||| || |||||||||||| |||| | |||||| |||| ||||||| ||| |||||||| | ||||||||||||||||| |||| || |
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| T |
2349250 |
gtgaaacattccttggcaatttcccaattgttaagtattaaagcatgtttagaaccaagcttgatagtgaatattggtccatatttatcagctaatggac |
2349151 |
T |
|
| Q |
214 |
ctaaagttctatgaggtgattgtgaagatcttaatagtgggaggtgaccaagtattggccatgcccctt |
282 |
Q |
| |
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||||| ||| || |||| |||| || || | ||||||||||||||||||||||||||| |||| |
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| T |
2349150 |
ctaaaactctgtggggtggttgtttgccactaaaaattgggaggtgaccaagtattggccatgcacctt |
2349082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 114 - 282
Target Start/End: Complemental strand, 2338201 - 2338033
Alignment:
| Q |
114 |
gtgaaacattcctttgccatttcccaattgctaagaaccaaagcacgtttggaaccaatcttaatagtgaacaagggtccatatttatcagccaatgcac |
213 |
Q |
| |
|
|||||||||||||| ||||||||||||||| | || | |||||| |||| | |||| ||| || ||||| || ||||||||||||||||| || | || |
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| T |
2338201 |
gtgaaacattccttggccatttcccaattgttgagtattaaagcatgtttagtgccaagcttgatggtgaataatggtccatatttatcagctaaggtac |
2338102 |
T |
|
| Q |
214 |
ctaaagttctatgaggtgattgtgaagatcttaatagtgggaggtgaccaagtattggccatgcccctt |
282 |
Q |
| |
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|||| |||||| |||||||||| | || |||| ||| |||||||||||||||||||| |||| |
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| T |
2338101 |
ctaagactctatggggtgattgtgtgccacgaaaaagtgagagatgaccaagtattggccatgcacctt |
2338033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 126 - 277
Target Start/End: Original strand, 2264031 - 2264182
Alignment:
| Q |
126 |
tttgccatttcccaattgctaagaaccaaagcacgtttggaaccaatcttaatagtgaacaagggtccatatttatcagccaatgcacctaaagttctat |
225 |
Q |
| |
|
|||||||||||||||||||| || ||||||||||| || | ||||| || || ||||| | |||||||||||| | ||||| | ||||| ||| ||| |
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| T |
2264031 |
tttgccatttcccaattgcttagtaccaaagcacgatttgtaccaagttttatggtgaataggggtccatatttgttagccatggtgcctaatgttttat |
2264130 |
T |
|
| Q |
226 |
gaggtgattgtgaagatcttaatagtgggaggtgaccaagtattggccatgc |
277 |
Q |
| |
|
|||||| || ||| | ||| | | |||||||||||||||||||||||| |
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|
| T |
2264131 |
gaggtgttttagaaccacctaagactaagaggtgaccaagtattggccatgc |
2264182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 99; Significance: 7e-49; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 45 - 299
Target Start/End: Complemental strand, 4303415 - 4303161
Alignment:
| Q |
45 |
gctccattgtaagtcatatgtttatatgcttcacctttaggacgagtggatattgccaagtcaattttggtgaaacattcctttgccatttcccaattgc |
144 |
Q |
| |
|
|||||||||||||||||||||| | || |||| | |||| ||| ||| ||||||||||||||||||||||||||||||| |||||||||||||| | |
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| T |
4303415 |
gctccattgtaagtcatatgttgagttgtttcaagtgtagggcgatcggaaattgccaagtcaattttggtgaaacattcctcagccatttcccaattac |
4303316 |
T |
|
| Q |
145 |
taagaaccaaagcacgtttggaaccaatcttaatagtgaacaagggtccatatttatcagccaatgcacctaaagttctatgaggtgattgtgaagatct |
244 |
Q |
| |
|
| || ||||||||| | | ||||||| || || ||||| || ||||||||| | ||||||||||||||||| |||||||||||| ||||||| | |
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| T |
4303315 |
ttagcaccaaagcatttctcgaaccaagtttgattgtgaataaaggtccatatgtgtcagccaatgcacctaaggttctatgaggtccttgtgaacctaa |
4303216 |
T |
|
| Q |
245 |
taatagtgggaggtgaccaagtattggccatgccccttgaactataggagcctct |
299 |
Q |
| |
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|||||| | ||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
4303215 |
caatagttgaaggtgaccaagtattggccatgccccttgaactatgggagcctct |
4303161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 45 - 156
Target Start/End: Complemental strand, 41340199 - 41340088
Alignment:
| Q |
45 |
gctccattgtaagtcatatgtttatatgcttcacctttaggacgagtggatattgccaagtcaattttggtgaaacattcctttgccatttcccaattgc |
144 |
Q |
| |
|
||||||||||||| || ||||||| | ||||| |||||| ||| | || | ||||||||||| |||||| |||||||||| |||||||||||||||| |
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| T |
41340199 |
gctccattgtaagccaaatgtttagttacttcaagtttagggcgatttgaaactgccaagtcaactttggtaaaacattcctcagccatttcccaattgc |
41340100 |
T |
|
| Q |
145 |
taagaaccaaag |
156 |
Q |
| |
|
|||| ||||||| |
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| T |
41340099 |
taagcaccaaag |
41340088 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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