View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10565_high_12 (Length: 293)
Name: NF10565_high_12
Description: NF10565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10565_high_12 |
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Alignment Details
Target: chr8 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 11 - 275
Target Start/End: Original strand, 14250554 - 14250818
Alignment:
| Q |
11 |
tgaagtgtaagattaagattggacaactcacgttctgactttggattgtagacccgatctttatccgattcttaaaaattgggttgggtctaactcaacc |
110 |
Q |
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| T |
14250554 |
tgaagtgtaagattaagatcggacaactcacgttccgactttggattgtagacccgatctttatccgattcttaaaaattgggttgggtctaactcaacc |
14250653 |
T |
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| Q |
111 |
ttacaaaacatcgcatctggagcatgatccgagtgaccaaacatgtagttgatagagtttgataccatcttagaatttgggtagggtctaatacgacctt |
210 |
Q |
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| T |
14250654 |
ttacaaaacatcacatctggagcatgatccgagtgaccaaacatgtagttgatagagtttgataccatcttagaatttgggtagggtctaatacgacctt |
14250753 |
T |
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| Q |
211 |
tacaaaaccggctcgtaaggtaagggaagtcttccacttataaactctttttcagttcaaaactc |
275 |
Q |
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| T |
14250754 |
tacaaaaccggctcgtaaggtaagggaagtcttccacttataaactctttttcagttcaaaactc |
14250818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 80 - 119
Target Start/End: Original strand, 22198986 - 22199025
Alignment:
| Q |
80 |
tcttaaaaattgggttgggtctaactcaaccttacaaaac |
119 |
Q |
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| T |
22198986 |
tcttaaaatttgggttgggcctaactcaaccttacaaaac |
22199025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 80 - 119
Target Start/End: Original strand, 21641405 - 21641444
Alignment:
| Q |
80 |
tcttaaaaattgggttgggtctaactcaaccttacaaaac |
119 |
Q |
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| T |
21641405 |
tcttaaaatttgggttgggcctaactcaaccttacaaaac |
21641444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 81 - 119
Target Start/End: Complemental strand, 10239549 - 10239511
Alignment:
| Q |
81 |
cttaaaaattgggttgggtctaactcaaccttacaaaac |
119 |
Q |
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| T |
10239549 |
cttaaaacttgggttgggcctaactcaaccttacaaaac |
10239511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 78 - 118
Target Start/End: Original strand, 17557706 - 17557746
Alignment:
| Q |
78 |
attcttaaaaattgggttgggtctaactcaaccttacaaaa |
118 |
Q |
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| T |
17557706 |
attcttagaatttgggttgggcctaactcaaccttacaaaa |
17557746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 265
Target Start/End: Complemental strand, 37685463 - 37685409
Alignment:
| Q |
211 |
tacaaaaccggctcgtaaggtaagggaagtcttccacttataaactctttttcag |
265 |
Q |
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||||||||| ||| ||||||||||||| |||| |||||||||| | ||||||||| |
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| T |
37685463 |
tacaaaaccagctagtaaggtaagggatgtctcccacttataagcactttttcag |
37685409 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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