View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10565_high_13 (Length: 288)
Name: NF10565_high_13
Description: NF10565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10565_high_13 |
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Alignment Details
Target: chr5 (Bit Score: 123; Significance: 3e-63; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 22 - 152
Target Start/End: Complemental strand, 31924774 - 31924644
Alignment:
| Q |
22 |
agagaaaaaccactaagctcatgaacaaaatacatctttcttatagtttctactttttcatgctctcaatcatgttcaccaatacttctactgcttcaac |
121 |
Q |
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| T |
31924774 |
agagaaaaaccactaagctcatgaacaaaatacatctttcttatagtttctacttttttatgctctcaatgatgttcaccaatacttctactgcttcaac |
31924675 |
T |
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| Q |
122 |
cattaaatgtctaggtatgcaattcttcctc |
152 |
Q |
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| T |
31924674 |
cattaaatgtctaggtatgcaattcttcctc |
31924644 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 217 - 270
Target Start/End: Complemental strand, 31924583 - 31924530
Alignment:
| Q |
217 |
catcttgttcatctaattcaaaccttctagttctatctttattccagatactag |
270 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||| |||||||||| |
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| T |
31924583 |
catcttgttcatctaattcaaaccttctagttctttctttattgcagatactag |
31924530 |
T |
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