View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10565_high_14 (Length: 251)
Name: NF10565_high_14
Description: NF10565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10565_high_14 |
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Alignment Details
Target: chr5 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 15 - 227
Target Start/End: Complemental strand, 2343456 - 2343244
Alignment:
| Q |
15 |
gaccacatggaaaaaggtaaatgacagctcaaacttttgctttcaactcaattcagatgtaaatactcaatatacatataacacaaaaaatgtatgctat |
114 |
Q |
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| T |
2343456 |
gaccacatggaaaaaggtaaatgacagctcaaacttttgcgttcaactcaattcagatgcaaatactcaatatacatataacacaaaaaatgtatgctat |
2343357 |
T |
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| Q |
115 |
gaatcttacagtattcgataatgtagggatatactcttgtgcgcctgtgaaatcactttcatctatatttccataatgcatagccactgggaactaagtt |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
2343356 |
gaatcttacagtattcgataatgtagggatatactcttgtgcgcctgtgaaatcactttcatctatatttccataatgcatagccactgggaactaaatt |
2343257 |
T |
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| Q |
215 |
aacattttctata |
227 |
Q |
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||||||||||||| |
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| T |
2343256 |
aacattttctata |
2343244 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 15 - 193
Target Start/End: Complemental strand, 2340730 - 2340552
Alignment:
| Q |
15 |
gaccacatggaaaaaggtaaatgacagctcaaacttttgctttcaactcaattcagatgtaaatactcaatatacatataacacaaaaaa-tgtatgcta |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||||||||| |||||||||||||||||| ||||||| | |
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| T |
2340730 |
gaccacatggaaaaaggtaaatgacagctcaaacttttgtgttcaactaacttcagatgtaaatactcaat-tacatataacacaaaaaaatgtatgcca |
2340632 |
T |
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| Q |
114 |
tgaatcttacagtattcgataatgtagggatatactcttgtgcgcctgtgaaatcactttcatctatatttccataatgc |
193 |
Q |
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| T |
2340631 |
tgaatcttacagtattcgataatgtagggagatactcttctgcgcctttgaaatcactttcatctatgtttccataatgc |
2340552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 15 - 95
Target Start/End: Complemental strand, 7750926 - 7750846
Alignment:
| Q |
15 |
gaccacatggaaaaaggtaaatgacagctcaaacttttgctttcaactcaattcagatgtaaatactcaatatacatataa |
95 |
Q |
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|||| ||||||||||||||| ||||||||||||| ||||| ||||||| | ||||||||||||| ||||||| |||||||| |
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| T |
7750926 |
gaccccatggaaaaaggtaagtgacagctcaaacatttgcattcaactgacttcagatgtaaatgctcaatacacatataa |
7750846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 104 - 201
Target Start/End: Complemental strand, 7750653 - 7750556
Alignment:
| Q |
104 |
atgtatgctatgaatcttacagtattcgataatgtagggatatactcttgtgcgcctgtgaaatcactttcatctatatttccataatgcatagccac |
201 |
Q |
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| T |
7750653 |
atgtacgccatgaaacttacagtattgggtaatgtagggagatgatcttctgcccctatgaaatcactctcatctatgtccccataatgcaaagccac |
7750556 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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