View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10565_high_18 (Length: 206)

Name: NF10565_high_18
Description: NF10565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10565_high_18
NF10565_high_18
[»] chr5 (2 HSPs)
chr5 (132-188)||(34500742-34500798)
chr5 (18-57)||(34500873-34500912)
[»] chr3 (3 HSPs)
chr3 (18-60)||(10215640-10215682)
chr3 (132-188)||(10215505-10215568)
chr3 (132-188)||(49093790-49093846)
[»] chr7 (1 HSPs)
chr7 (132-176)||(21373648-21373692)
[»] chr6 (1 HSPs)
chr6 (132-176)||(11764296-11764340)


Alignment Details
Target: chr5 (Bit Score: 57; Significance: 5e-24; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 132 - 188
Target Start/End: Complemental strand, 34500798 - 34500742
Alignment:
Q  132 atataaaatagtttataaatggggttaacccatttaatatgtattgcagttaaaatc 188  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34500798 atataaaatagtttataaatggggttaacccatttaatatgtattgcagttaaaatc 34500742  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 18 - 57
Target Start/End: Complemental strand, 34500912 - 34500873
Alignment:
Q  18 agatctggaaagtttgtaagaggcagactgagaaatttgg 57  Q
    |||||| |||||||||| ||||||||||||||||||||||    
T  34500912 agatctagaaagtttgtgagaggcagactgagaaatttgg 34500873  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 10215682 - 10215640
Alignment:
Q  18 agatctggaaagtttgtaagaggcagactgagaaatttgggtt 60  Q
    ||||||||||||||||| |||||||||||||||||||||||||    
T  10215682 agatctggaaagtttgtgagaggcagactgagaaatttgggtt 10215640  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 132 - 188
Target Start/End: Complemental strand, 10215568 - 10215505
Alignment:
Q  132 atataaaatagtttataaatggggttaaccc-------atttaatatgtattgcagttaaaatc 188  Q
    |||||||||| ||||||||||||||||||||       ||||||||||||||||||||||||||    
T  10215568 atataaaatattttataaatggggttaacccttaacccatttaatatgtattgcagttaaaatc 10215505  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 188
Target Start/End: Original strand, 49093790 - 49093846
Alignment:
Q  132 atataaaatagtttataaatggggttaacccatttaatatgtattgcagttaaaatc 188  Q
    ||||||| ||| || ||||||||||||| ||||||| |||||| || ||||||||||    
T  49093790 atataaattagattttaaatggggttaaaccatttagtatgtaatgaagttaaaatc 49093846  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 176
Target Start/End: Original strand, 21373648 - 21373692
Alignment:
Q  132 atataaaatagtttataaatggggttaacccatttaatatgtatt 176  Q
    ||||||||||| || ||||||||||||| ||||||||||| ||||    
T  21373648 atataaaatagattttaaatggggttaaaccatttaatatctatt 21373692  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 176
Target Start/End: Complemental strand, 11764340 - 11764296
Alignment:
Q  132 atataaaatagtttataaatggggttaacccatttaatatgtatt 176  Q
    ||||||||||| || ||||||||||||| ||||||||||| ||||    
T  11764340 atataaaatagattttaaatggggttaaaccatttaatatctatt 11764296  T

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