View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10565_high_4 (Length: 425)
Name: NF10565_high_4
Description: NF10565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10565_high_4 |
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| [»] scaffold0662 (1 HSPs) |
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| [»] scaffold0702 (2 HSPs) |
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Alignment Details
Target: scaffold0662 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: scaffold0662
Description:
Target: scaffold0662; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 16 - 418
Target Start/End: Complemental strand, 2725 - 2323
Alignment:
| Q |
16 |
cattcttccttcaaggatttccatctgttctcaaaagtgtcacttagcctcttggcagctttgtgaacatcatccttccaagggtataataatccatgag |
115 |
Q |
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|||||||||||||| |||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
2725 |
cattcttccttcaaagatttccatctgttctcaaaagtgtcgcttagcctcttcgccgctttgtgaacatcatccttccaagtgtataataatccatgag |
2626 |
T |
|
| Q |
116 |
agaaaacaagtctcatatcatcagcaaattcatcaggtgttgaataaaatcccaacttagcttcaatgtccttcaaacccatatttgccttcaactttgg |
215 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2625 |
agaaaacaagtctcacatcatcagcaaattcatcaggtgttgaataaaatcccaacttagcttcaatgtccttcaaacccatatttgccttcaactcgta |
2526 |
T |
|
| Q |
216 |
cttgttctctaaacagtttgacttcgataaaccctccaaaaccttgagatcgagagggtgcttcagagcccacccatctcttccttcaatcatctttttc |
315 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2525 |
cttgttttctaaacagtttgacttcgataaaccctccaaaaccttgagatcgagagggtgcttcagagcccacccatctcttccttcaatcatctttttc |
2426 |
T |
|
| Q |
316 |
aatataacccaacattgcattttcttgtaatgctccattggtttcttatgctcctcnnnnnnnatcaactctgcatcaccatcattcttcaaggtaccct |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| |
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| T |
2425 |
aatataacccaacattgcattttcttgtaatgctccattggtttcttatgctcctctttttttatcaactctgcattaccatcattcttcaaggtaccct |
2326 |
T |
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| Q |
416 |
ttg |
418 |
Q |
| |
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||| |
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| T |
2325 |
ttg |
2323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0702 (Bit Score: 312; Significance: 1e-176; HSPs: 2)
Name: scaffold0702
Description:
Target: scaffold0702; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 16 - 371
Target Start/End: Original strand, 5371 - 5726
Alignment:
| Q |
16 |
cattcttccttcaaggatttccatctgttctcaaaagtgtcacttagcctcttggcagctttgtgaacatcatccttccaagggtataataatccatgag |
115 |
Q |
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|||||||||||||| |||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
5371 |
cattcttccttcaaagatttccatctgttctcaaaagtgtcgcttagcctcttcgccgctttgtgaacatcatccttccaagtgtataataatccatgag |
5470 |
T |
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| Q |
116 |
agaaaacaagtctcatatcatcagcaaattcatcaggtgttgaataaaatcccaacttagcttcaatgtccttcaaacccatatttgccttcaactttgg |
215 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5471 |
agaaaacaagtctcacatcatcagcaaattcatcaggtgttgaataaaatcccaacttagcttcaatgtccttcaaacccatatttgccttcaactcgta |
5570 |
T |
|
| Q |
216 |
cttgttctctaaacagtttgacttcgataaaccctccaaaaccttgagatcgagagggtgcttcagagcccacccatctcttccttcaatcatctttttc |
315 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5571 |
cttgttttctaaacagtttgacttcgataaaccctccaaaaccttgagatcgagagggtgcttcagagcccacccatctcttccttcaatcatctttttc |
5670 |
T |
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| Q |
316 |
aatataacccaacattgcattttcttgtaatgctccattggtttcttatgctcctc |
371 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5671 |
aatataacccaacattgcattttcttgtaatgctccattggtttcttatgctcctc |
5726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0702; HSP #2
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 24 - 415
Target Start/End: Original strand, 2065 - 2456
Alignment:
| Q |
24 |
cttcaaggatttccatctgttctcaaaagtgtcacttagcctcttggcagctttgtgaacatcatccttccaagggtataataatccatgagagaaaaca |
123 |
Q |
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|||||| |||| ||||||||||||||||||||| ||||||||| |||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
2065 |
cttcaaagattcccatctgttctcaaaagtgtcgtgtagcctctttgcagttttgtgaacatcatccttccaagtgtataataatccatgagagaaaaca |
2164 |
T |
|
| Q |
124 |
agtctcatatcatcagcaaattcatcaggtgttgaataaaatcccaacttagcttcaatgtccttcaaacccatatttgccttcaactttggcttgttct |
223 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |
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| T |
2165 |
agtctcacatcatcagcaaattcatcaggtgttgaataaaatcccaacttagcttcaatgtccttcaaacccatatttgccttcaactcgtacttgtttt |
2264 |
T |
|
| Q |
224 |
ctaaacagtttgacttcgataaaccctccaaaaccttgagatcgagagggtgcttcagagcccacccatctcttccttcaatcatctttttcaatataac |
323 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2265 |
ctaaacagtttgacttcgataaaccctccaaaaccttgagatcgagagggtgcttcagagcccacccatctcttccttcaatcatctttttcaatataac |
2364 |
T |
|
| Q |
324 |
ccaacattgcattttcttgtaatgctccattggtttcttatgctcctcnnnnnnnatcaactctgcatcaccatcattcttcaaggtaccct |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||||||||| |
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| T |
2365 |
ccaacattgcattttcttgtaatgctccattggtttcttattctccactttttttatcaactctgcatcaccatcattcttcaaggtaccct |
2456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 24 - 418
Target Start/End: Original strand, 35172072 - 35172466
Alignment:
| Q |
24 |
cttcaaggatttccatctgttctcaaaagtgtcacttagcctcttggcagctttgtgaacatcatccttccaagggtataataatccatgagagaaaaca |
123 |
Q |
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|||||| |||| |||||||||||| |||||||| ||||||||| |||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
35172072 |
cttcaaagattcccatctgttctcgaaagtgtcgtgtagcctctttgcagttttgtgaacatcatccttccaagtgtataataatccatgagagaaaaca |
35172171 |
T |
|
| Q |
124 |
agtctcatatcatcagcaaattcatcaggtgttgaataaaatcccaacttagcttcaatgtccttcaaacccatatttgccttcaactttggcttgttct |
223 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |
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| T |
35172172 |
agtctcacatcatcagcaaattcatcaggtgttgaataaaatcccaacttagcttcaatgtccttcaaacccatatttgccttcaactcgtacttgtttt |
35172271 |
T |
|
| Q |
224 |
ctaaacagtttgacttcgataaaccctccaaaaccttgagatcgagagggtgcttcagagcccacccatctcttccttcaatcatctttttcaatataac |
323 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35172272 |
ctaaacagtttgacttcgataaaccctccaaaaccttgagatcgagagggtgcttcagagcccacccatctcttccttcaatcatctttttcaatataac |
35172371 |
T |
|
| Q |
324 |
ccaacattgcattttcttgtaatgctccattggtttcttatgctcctcnnnnnnnatcaactctgcatcaccatcattcttcaaggtaccctttg |
418 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| |
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| T |
35172372 |
ccaacattgcattttcttgtaatgctccattggtttcttatgctcctctttttttatcaactctgcattaccatcattcttcaaggtaccctttg |
35172466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 75 - 161
Target Start/End: Complemental strand, 51186145 - 51186059
Alignment:
| Q |
75 |
tttgtgaacatcatccttccaagggtataataatccatgagagaaaacaagtctcatatcatcagcaaattcatcaggtgttgaata |
161 |
Q |
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||||||||| ||||||||||||||||| | ||||||||||| || |||| |||||||| |||||||| ||||| || |||||||| |
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| T |
51186145 |
tttgtgaacctcatccttccaagggtaaagcaatccatgagataatacaaacctcatatcctcagcaaactcatctggagttgaata |
51186059 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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