View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10565_low_1 (Length: 615)
Name: NF10565_low_1
Description: NF10565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10565_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 297; Significance: 1e-166; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 297; E-Value: 1e-166
Query Start/End: Original strand, 19 - 358
Target Start/End: Complemental strand, 11839118 - 11838778
Alignment:
| Q |
19 |
acggtagggactaggaaatctgaattcaaaaggaatcaaaatttacttccttttctattggtgtgatatatcagttgaagcattgggcatcaaggaattt |
118 |
Q |
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| T |
11839118 |
acggtagggactaggaaatctgaattcaaaaggaatcaaaatttacttcctttactattggtgtgatatgtcagttgaagcattgggcattaaggaattt |
11839019 |
T |
|
| Q |
119 |
ctgccggcgtatttggatccaaatatccaacctagcgatctcgtcacgggtgtttgctttgcatccggtggttccgggtatgatccactcacatccaaaa |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
11839018 |
ctgccggcgtatttggatccaaatatccaacctagcgatctcgtcacgggtgtttgctttgcatccagtggttccgggtatgatccactcacatccaaaa |
11838919 |
T |
|
| Q |
219 |
gtgcggtaagcatgcatactgcatacc-ccccggtcctatttataaaagatacgttgatcaacaaaagttactgaatctagtttaaaatttgatctaaat |
317 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| ||| ||||||||||||||||||||||||| || |
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| T |
11838918 |
gtgcggtaagcatgcatactgcatacccccccggtcctatttataaaagacacgttgatcaacaaaaattaatgaatctagtttaaaatttgatctagat |
11838819 |
T |
|
| Q |
318 |
atattaatctaaatgtttcttataaataggaccgaaaatag |
358 |
Q |
| |
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| T |
11838818 |
atattaatctaaatgtttcttataaataggaccaaaaatag |
11838778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 172; E-Value: 4e-92
Query Start/End: Original strand, 424 - 599
Target Start/End: Complemental strand, 11838731 - 11838556
Alignment:
| Q |
424 |
cttattcctttctaacttagtcactgtatcatattattaaccagtcagctatatcgttgtccggtcaaataattttgttcaaagaatacataggaaagct |
523 |
Q |
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| T |
11838731 |
cttattcctttctaacttggtcactgtatcatattattaaccagtcagctatatcgttgtccggtcaaataattttgttcaaagaatacataggaaagct |
11838632 |
T |
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| Q |
524 |
aaaaggaattgttggagagggtagaaaaaatttcatcctagccaacagtgttttccttgtggttcaaggaagtaac |
599 |
Q |
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| T |
11838631 |
aaaaggaattgttggagagggtagaaaaaatttcatcctagccaacagtgttttccttgtggttcaaggaagtaac |
11838556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 17 - 358
Target Start/End: Original strand, 53276196 - 53276537
Alignment:
| Q |
17 |
agacggtagggactaggaaatctgaattcaaaaggaatcaaaatttacttccttttctattggtgtgatatatcagttgaagcattgggcatcaaggaat |
116 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
53276196 |
agacggcagggactaggaaatctgaattcaaaaggaatcaaaatttacttccttttctattggtgtgatatatcagttgaagcattgggcattaaggaat |
53276295 |
T |
|
| Q |
117 |
ttctgccggcgtatttggatccaaatatccaacctagcgatctcgtcacgggtgtttgctttgcatccggtggttccgggtatgatccactcacatccaa |
216 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
53276296 |
ttctgccggcgtatttggatccaaatatccaacctagcgatctcgtcacgggtgtttgctttgcatccggtggttctgggtatgatccactcacatccaa |
53276395 |
T |
|
| Q |
217 |
aagtgcggtaagcatgcatactgcataccccccggtcctatttataaaagatacgttgatcaacaaaagttactgaatctagtttaaaatttgatctaaa |
316 |
Q |
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||||||||||||||||||| ||||||||| ||| || ||||||||||||| |||||||||||||||| ||| ||||||||||||||||||| ||||| | |
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| T |
53276396 |
aagtgcggtaagcatgcatcctgcataccttccgatcttatttataaaagacacgttgatcaacaaaaattaatgaatctagtttaaaatttaatctaga |
53276495 |
T |
|
| Q |
317 |
tatattaatctaaatgtttcttataaataggaccgaaaatag |
358 |
Q |
| |
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|| |||||||||||||||| |||||||||||| ||||||||| |
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| T |
53276496 |
tacattaatctaaatgtttattataaataggatcgaaaatag |
53276537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 172; E-Value: 4e-92
Query Start/End: Original strand, 424 - 599
Target Start/End: Original strand, 53276602 - 53276777
Alignment:
| Q |
424 |
cttattcctttctaacttagtcactgtatcatattattaaccagtcagctatatcgttgtccggtcaaataattttgttcaaagaatacataggaaagct |
523 |
Q |
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|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53276602 |
cttattcctttctaacttggtcactgtatcatattattaaccagtcagctatatcgttgtccggtcaaataattttgttcaaagaatacataggaaagct |
53276701 |
T |
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| Q |
524 |
aaaaggaattgttggagagggtagaaaaaatttcatcctagccaacagtgttttccttgtggttcaaggaagtaac |
599 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53276702 |
aaaaggaattgttggagagggtagaaaaaatttcatcctagccaacagtgttttccttgtggttcaaggaagtaac |
53276777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 248 - 287
Target Start/End: Original strand, 12062568 - 12062607
Alignment:
| Q |
248 |
ccggtcctatttataaaagatacgttgatcaacaaaagtt |
287 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||||| |
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| T |
12062568 |
ccggtcctatttataaaagatattttgatcaacaaaagtt |
12062607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 87 - 204
Target Start/End: Original strand, 8243023 - 8243140
Alignment:
| Q |
87 |
tatcagttgaagcattgggcatcaaggaatttctgccggcgtatttggatccaaatatccaacctagcgatctcgtcacgggtgtttgctttgcatccgg |
186 |
Q |
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|||||||||||| ||| ||||| || |||| ||| || || ||||||||||||||| |||| ||||| || | | ||| || ||| |||||||||||| |
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| T |
8243023 |
tatcagttgaagaattaggcattaaagaatatctaccagcatatttggatccaaatctccagcctagtgaattggccactggcgttaactttgcatccgg |
8243122 |
T |
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| Q |
187 |
tggttccgggtatgatcc |
204 |
Q |
| |
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|||| | || |||||||| |
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| T |
8243123 |
tggtgcaggatatgatcc |
8243140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 498 - 586
Target Start/End: Original strand, 8232988 - 8233076
Alignment:
| Q |
498 |
ttgttcaaagaatacataggaaagctaaaaggaattgttggagagggtagaaaaaatttcatcctagccaacagtgttttccttgtggt |
586 |
Q |
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||||||||||||||||||||||| ||| || | |||||||||| | |||| ||| |||||| | || || ||| ||||||||||||| |
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| T |
8232988 |
ttgttcaaagaatacataggaaaattaagagaacttgttggagaagacagaacaaacttcatcttggcaaatagtcttttccttgtggt |
8233076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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