View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10565_low_12 (Length: 303)
Name: NF10565_low_12
Description: NF10565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10565_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 5 - 293
Target Start/End: Original strand, 48756285 - 48756574
Alignment:
| Q |
5 |
cagatttaacataacacttccttgaattatttcatgaaagctctagtatgcaaagaaatccttttaatgtttaagcagaaggaaagaaaccactatcagg |
104 |
Q |
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| T |
48756285 |
cagatttaacataacacttccttgaattatttcatgaaagctctagtatgcaaagaaatccttttaatgtttaagcagaaggaaagaaaccactatcagg |
48756384 |
T |
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| Q |
105 |
gattatggattttataccaaagttgcatagatgagtgacagcgaacaagatctcaatgacaaaaattgcagattatttcctttgtaaaaccat-aaacca |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| |
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| T |
48756385 |
gattatggattttataccaaagttgcatagatgagtgacagcgaacaagatctcaatgacaaaaattgcagattatttccattgtaaaaccataaaacca |
48756484 |
T |
|
| Q |
204 |
acatatagcctatagggatttcacgtagtttggttcgagttagtaaactgtgtctgaagtataggtttggttcgtctgaagcacaggttc |
293 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |
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| T |
48756485 |
acatatagcctatagggatttcacgtagtttggttcgagttagtaaactgtgtctgaagtataggtttggttcgtctgaagtataggttc |
48756574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 22 - 126
Target Start/End: Complemental strand, 26546614 - 26546510
Alignment:
| Q |
22 |
ttccttgaattatttcatgaaagctctagtatgcaaagaaatccttttaatgtttaagcagaaggaaagaaaccactatcagggattatggattttatac |
121 |
Q |
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|||||||||||||||||||||| ||||||||||||| ||||||| |||||| |||| |||||||||| |||| |||||| |||||| ||||||||||||| |
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| T |
26546614 |
ttccttgaattatttcatgaaaactctagtatgcaaggaaatccatttaatatttatgcagaaggaatgaaatcactattagggatcatggattttatac |
26546515 |
T |
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| Q |
122 |
caaag |
126 |
Q |
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||||| |
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| T |
26546514 |
caaag |
26546510 |
T |
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