View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10565_low_2 (Length: 501)
Name: NF10565_low_2
Description: NF10565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10565_low_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 39 - 464
Target Start/End: Original strand, 5232485 - 5232906
Alignment:
| Q |
39 |
gaaatatttgatcgtactcacatgtgtcagtatcatgttggtgttggacaccgacacgtgttgacaccagacacgccttcaatcagagaatgcaattcat |
138 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
5232485 |
gaaatatttgatcgtactcacatgtatcagtatcatgttggtgttggacaccgacacgtgttgacac---acacgccttcaatcagagaatgcaattcat |
5232581 |
T |
|
| Q |
139 |
atgaatctctagcgtgtatctagtcagacatgactctcatcttaatttttcattaattatactgaatcctaatttattatgatgaatccttaattcattc |
238 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
5232582 |
atgaatctctagcgtgtatctagtcagacatgactctcatcttaatttttcattaattataatgaatcctaatttattatgatgaatcc-taattcattc |
5232680 |
T |
|
| Q |
239 |
taataatttactaactgaattttgtgtagtcaaccactttttctgtcatctttgtataccatcaatttttctttaggtcatttggtagatgacctaaatt |
338 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5232681 |
taataatttactaactgaattttgtgtagtcaaccactttttctgtcatctttgtataccatcaatttttctttaggtcatttggtagatgacctaaatt |
5232780 |
T |
|
| Q |
339 |
tgaannnnnnnatggttcatatacgatatatcggtttataattttgttatgtcacttgctttttcaacttagaataacatttttattgacaatatatctt |
438 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5232781 |
tgaatttttttatggttcatatacgatatatcggtttataattttgttatgtcacttgctttttcaacttagaataacatttttattgacaatatatctt |
5232880 |
T |
|
| Q |
439 |
acaatttataataagattcgattcac |
464 |
Q |
| |
|
|| ||| ||||||||||| ||||||| |
|
|
| T |
5232881 |
acgattcataataagattagattcac |
5232906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 417 - 468
Target Start/End: Complemental strand, 9837009 - 9836958
Alignment:
| Q |
417 |
atttttattgacaatatatcttacaatttataataagattcgattcacgatt |
468 |
Q |
| |
|
||||||||||||||||| |||| | ||||||||||||||| ||||| ||||| |
|
|
| T |
9837009 |
atttttattgacaatatttcttgcgatttataataagatttgattctcgatt |
9836958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 416 - 454
Target Start/End: Complemental strand, 26576476 - 26576438
Alignment:
| Q |
416 |
catttttattgacaatatatcttacaatttataataaga |
454 |
Q |
| |
|
|||||||||||||||| |||||||||||| ||||||||| |
|
|
| T |
26576476 |
catttttattgacaatgtatcttacaattcataataaga |
26576438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 431 - 468
Target Start/End: Original strand, 7057646 - 7057683
Alignment:
| Q |
431 |
tatatcttacaatttataataagattcgattcacgatt |
468 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| |||| |
|
|
| T |
7057646 |
tatatattacaatttataataagattcgattcatgatt |
7057683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 417 - 469
Target Start/End: Original strand, 5912781 - 5912833
Alignment:
| Q |
417 |
atttttattgacaatatatcttacaatttataataagattcgattcacgattc |
469 |
Q |
| |
|
|||||||||| |||| |||||||||||| || |||| ||||||||||||||| |
|
|
| T |
5912781 |
atttttattggcaatgtatcttacaattgatgctaagtttcgattcacgattc |
5912833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 417 - 469
Target Start/End: Original strand, 19454188 - 19454240
Alignment:
| Q |
417 |
atttttattgacaatatatcttacaatttataataagattcgattcacgattc |
469 |
Q |
| |
|
||||||| || |||| |||||||||||| ||| |||||||| ||||||||||| |
|
|
| T |
19454188 |
atttttaatggcaatgtatcttacaattcatagtaagattcaattcacgattc |
19454240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 433 - 469
Target Start/End: Complemental strand, 35578271 - 35578235
Alignment:
| Q |
433 |
tatcttacaatttataataagattcgattcacgattc |
469 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| |||| |
|
|
| T |
35578271 |
tatcttacgatttataataagattcgattcacaattc |
35578235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 425 - 465
Target Start/End: Complemental strand, 38340403 - 38340363
Alignment:
| Q |
425 |
tgacaatatatcttacaatttataataagattcgattcacg |
465 |
Q |
| |
|
||||||| ||||||||| || |||||||||||||||||||| |
|
|
| T |
38340403 |
tgacaatgtatcttacacttcataataagattcgattcacg |
38340363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University