View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10565_low_22 (Length: 240)
Name: NF10565_low_22
Description: NF10565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10565_low_22 |
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Alignment Details
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 39840186 - 39840404
Alignment:
| Q |
1 |
ttcttctttcttattctctctcagacgtacgtcaaaaaatgcccgctgctcctctgaaaccccgcagaataagctcccgcagaagaagcgcaactagtca |
100 |
Q |
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| T |
39840186 |
ttcttctttcttattctctctcagacgtacgtcaaaaaatgcccgctgctcctctgaaaccccgcagaataagctcccgcagaagaagcgcaactagtca |
39840285 |
T |
|
| Q |
101 |
atatctgttaccaactggtgagtctgttcgttagttatgttatgttatgttgattcactattcattccttacacttcaattgtagctaatttaatccatg |
200 |
Q |
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| T |
39840286 |
atatctgttaccaactggtgagtctgttcgtta-----gttatgttatgttgattcactattcattccttacacttcaattgtagctaatttaatccatg |
39840380 |
T |
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| Q |
201 |
attaattgttcctttctctacttt |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
39840381 |
attaattgttcctttctctacttt |
39840404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 39845072 - 39845143
Alignment:
| Q |
1 |
ttcttctttcttattctctctcagacgtacgtcaaaaaatgcccgctgctcctctgaaaccccgcagaataagc |
74 |
Q |
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| T |
39845072 |
ttcttctttcttattctttc--agacgtacatcaaaaaatgcctgctgctcctctgaaaccccgcagaagaagc |
39845143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 179 - 224
Target Start/End: Original strand, 39845311 - 39845356
Alignment:
| Q |
179 |
attgtagctaatttaatccatgattaattgttcctttctctacttt |
224 |
Q |
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| T |
39845311 |
attgtagttaatttaatcgatgattaattgttcctttctctacttt |
39845356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 44631241 - 44631200
Alignment:
| Q |
1 |
ttcttctttcttattctctctcagacgtacgtcaaaaaatgc |
42 |
Q |
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| T |
44631241 |
ttcttctttattattctctctcagacgtacatcaaaaaatgc |
44631200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 44798221 - 44798180
Alignment:
| Q |
1 |
ttcttctttcttattctctctcagacgtacgtcaaaaaatgc |
42 |
Q |
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| T |
44798221 |
ttcttctttattattctctctcagacgtacatcaaaaaatgc |
44798180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 42
Target Start/End: Original strand, 35161887 - 35161925
Alignment:
| Q |
4 |
ttctttcttattctctctcagacgtacgtcaaaaaatgc |
42 |
Q |
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|||||| ||||||||||||||||||| |||||||||||| |
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| T |
35161887 |
ttctttattattctctctcagacgtatgtcaaaaaatgc |
35161925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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