View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10565_low_24 (Length: 221)

Name: NF10565_low_24
Description: NF10565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10565_low_24
NF10565_low_24
[»] chr8 (5 HSPs)
chr8 (3-192)||(26175147-26175339)
chr8 (3-192)||(7275363-7275553)
chr8 (147-191)||(4677507-4677551)
chr8 (176-221)||(26175026-26175071)
chr8 (181-215)||(7275636-7275670)
[»] chr3 (5 HSPs)
chr3 (3-192)||(4607167-4607356)
chr3 (178-219)||(10745215-10745256)
chr3 (125-166)||(10745351-10745392)
chr3 (125-192)||(42656484-42656551)
chr3 (176-215)||(42657287-42657326)
[»] scaffold0001 (2 HSPs)
scaffold0001 (3-192)||(144862-145053)
scaffold0001 (176-215)||(145127-145166)
[»] chr6 (2 HSPs)
chr6 (3-192)||(6823236-6823427)
chr6 (176-215)||(6823540-6823579)
[»] chr1 (5 HSPs)
chr1 (17-191)||(35267719-35267893)
chr1 (65-192)||(9906100-9906226)
chr1 (102-192)||(18703387-18703478)
chr1 (178-219)||(35267989-35268030)
chr1 (181-215)||(18703515-18703549)
[»] chr7 (6 HSPs)
chr7 (3-192)||(34512552-34512746)
chr7 (3-192)||(41832335-41832525)
chr7 (1-192)||(7737011-7737201)
chr7 (46-191)||(219305-219448)
chr7 (176-215)||(34512434-34512473)
chr7 (1-78)||(23612133-23612210)
[»] scaffold1412 (2 HSPs)
scaffold1412 (39-192)||(2-155)
scaffold1412 (176-215)||(268-307)
[»] chr4 (4 HSPs)
chr4 (1-192)||(5444422-5444612)
chr4 (61-192)||(11814847-11814977)
chr4 (180-221)||(5444345-5444386)
chr4 (178-216)||(55850266-55850304)
[»] chr2 (3 HSPs)
chr2 (3-192)||(24039188-24039377)
chr2 (3-192)||(31269681-31269870)
chr2 (125-191)||(36316583-36316650)
[»] chr5 (7 HSPs)
chr5 (3-192)||(21256349-21256539)
chr5 (1-191)||(17823254-17823444)
chr5 (1-192)||(41949583-41949773)
chr5 (125-192)||(35304957-35305024)
chr5 (42-118)||(15543938-15544014)
chr5 (3-95)||(43233662-43233753)
chr5 (178-216)||(35305105-35305143)
[»] scaffold0525 (1 HSPs)
scaffold0525 (3-152)||(2248-2396)
[»] scaffold0263 (1 HSPs)
scaffold0263 (1-192)||(22628-22812)
[»] scaffold0862 (1 HSPs)
scaffold0862 (3-95)||(49-141)


Alignment Details
Target: chr8 (Bit Score: 147; Significance: 1e-77; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 3 - 192
Target Start/End: Complemental strand, 26175339 - 26175147
Alignment:
Q  3 gaaaatacaaggaaagatgctggaaacacatcggctaaaaaca---tagtcatcaaacaagtgcttatccaacaagaagcaaccacaactcaaggttgaa 99  Q
    |||||||||||||||||||| || ||||||||||||||||| |   ||||||||||||||||||||||||||||||||||||||| |||||||| |||||    
T  26175339 gaaaatacaaggaaagatgccgggaacacatcggctaaaaaaaaaatagtcatcaaacaagtgcttatccaacaagaagcaaccaaaactcaagattgaa 26175240  T
Q  100 ccaattgaaggaagaagcatcaatgcaacgcttaaccaccatctggtagaagcaatcatcaacaaagccaattaaggcacaacgcttaaccat 192  Q
    ||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||    
T  26175239 ccaattgaaggaagaagcatcaaagcaacgcttaaccaccatccggtagaagcaatcatcaacaaagccaattaaggcaccacgcttaaccat 26175147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 3 - 192
Target Start/End: Original strand, 7275363 - 7275553
Alignment:
Q  3 gaaaatacaaggaaagatgctggaaacacatcggctaaaaacatagtcatcaaacaagtgcttatccaacaagaagcaaccacaactcaaggttgaacca 102  Q
    ||||||||||||||||||||  |||| |||| ||| || ||||||| || ||| |||  ||||||||||||||| | ||||||||||||||||  || ||    
T  7275363 gaaaatacaaggaaagatgccagaaatacattggccaagaacatag-caacaatcaaaggcttatccaacaagaggaaaccacaactcaaggtgtaatca 7275461  T
Q  103 a-ttgaaggaagaagcatcaatgcaacgcttaaccaccatctggtagaag-caatcatcaacaaagccaattaaggcacaacgcttaaccat 192  Q
      ||| ||||||||||| |||  |||||||||||||||||| |||||||| |||||||||||||||||    ||||||||| ||||||||||    
T  7275462 ccttggaggaagaagcagcaaaccaacgcttaaccaccatccggtagaagccaatcatcaacaaagccttaaaaggcacaatgcttaaccat 7275553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 147 - 191
Target Start/End: Complemental strand, 4677551 - 4677507
Alignment:
Q  147 agaagcaatcatcaacaaagccaattaaggcacaacgcttaacca 191  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  4677551 agaagcaatcatcaacaaagccaattaaggcacaacgcttaacca 4677507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 176 - 221
Target Start/End: Complemental strand, 26175071 - 26175026
Alignment:
Q  176 gcacaacgcttaaccattcatgacggaagcttatcaacatggctga 221  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||    
T  26175071 gcacaacgcttaaccattcatgacgaaagcttatcaacatggctga 26175026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 215
Target Start/End: Original strand, 7275636 - 7275670
Alignment:
Q  181 acgcttaaccattcatgacggaagcttatcaacat 215  Q
    ||||||||||||||||||| |||||||||||||||    
T  7275636 acgcttaaccattcatgacagaagcttatcaacat 7275670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 134; Significance: 6e-70; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 3 - 192
Target Start/End: Complemental strand, 4607356 - 4607167
Alignment:
Q  3 gaaaatacaaggaaagatgctggaaacacatcggctaaaaacatagtcatcaaacaagtgcttatccaacaagaagcaaccacaactcaaggttgaacca 102  Q
    |||||||||||||||||||  || ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4607356 gaaaatacaaggaaagatgtcgggaacacatcggctaaaaacaaagtcatcaaacaagtgcttatccaacaagaagcaaccacaactcaaggttgaacca 4607257  T
Q  103 attgaaggaagaagcatcaatgcaacgcttaaccaccatctggtagaagcaatcatcaacaaagccaattaaggcacaacgcttaaccat 192  Q
    |||  |||| |||||||||| ||||||||||| ||||||| ||||||||| | |||| ||||||||||||| ||||||||||||||||||    
T  4607256 atttcaggatgaagcatcaaagcaacgcttaaacaccatccggtagaagccaacatcgacaaagccaattagggcacaacgcttaaccat 4607167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 178 - 219
Target Start/End: Complemental strand, 10745256 - 10745215
Alignment:
Q  178 acaacgcttaaccattcatgacggaagcttatcaacatggct 219  Q
    ||||| |||||||||||||||| |||||||||||||||||||    
T  10745256 acaacacttaaccattcatgacagaagcttatcaacatggct 10745215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 125 - 166
Target Start/End: Complemental strand, 10745392 - 10745351
Alignment:
Q  125 caacgcttaaccaccatctggtagaagcaatcatcaacaaag 166  Q
    |||||||||||||||||||||||||||||| || ||||||||    
T  10745392 caacgcttaaccaccatctggtagaagcaagcaccaacaaag 10745351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 125 - 192
Target Start/End: Original strand, 42656484 - 42656551
Alignment:
Q  125 caacgcttaaccaccatctggtagaagcaatcatcaacaaagccaattaaggcacaacgcttaaccat 192  Q
    |||||||||||||||||| ||||||||| | || | |||||||||   |||||||||| |||||||||    
T  42656484 caacgcttaaccaccatccggtagaagccaacaaccacaaagccataaaaggcacaacacttaaccat 42656551  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 176 - 215
Target Start/End: Original strand, 42657287 - 42657326
Alignment:
Q  176 gcacaacgcttaaccattcatgacggaagcttatcaacat 215  Q
    |||||||||||||||||||||||| ||||| |||||||||    
T  42657287 gcacaacgcttaaccattcatgacagaagcctatcaacat 42657326  T

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Target: scaffold0001 (Bit Score: 129; Significance: 6e-67; HSPs: 2)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 3 - 192
Target Start/End: Original strand, 144862 - 145053
Alignment:
Q  3 gaaaatacaaggaaagatgctggaaacacatcggctaaaaacata--gtcatcaaacaagtgcttatccaacaagaagcaaccacaactcaaggttgaac 100  Q
    |||||||||||||||||||| |||||||||||||||||||| |||  ||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  144862 gaaaatacaaggaaagatgccggaaacacatcggctaaaaaaatatagtcatcaaacaagagcttatccaacaagaagcaaccacaactcaaggttgaac 144961  T
Q  101 caattgaaggaagaagcatcaatgcaacgcttaaccaccatctggtagaagcaatcatcaacaaagccaattaaggcacaacgcttaaccat 192  Q
    ||||||||||||| |||||||| ||||||||||||||||||| ||||||||| |  ||| |||||||||   ||||||||||||||||||||    
T  144962 caattgaaggaaggagcatcaaagcaacgcttaaccaccatccggtagaagccaatatccacaaagccataaaaggcacaacgcttaaccat 145053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 176 - 215
Target Start/End: Original strand, 145127 - 145166
Alignment:
Q  176 gcacaacgcttaaccattcatgacggaagcttatcaacat 215  Q
    |||||| ||||||||||||||||| |||||||||||||||    
T  145127 gcacaatgcttaaccattcatgacagaagcttatcaacat 145166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 129; Significance: 6e-67; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 3 - 192
Target Start/End: Original strand, 6823236 - 6823427
Alignment:
Q  3 gaaaatacaaggaaagatgctggaaacacatcggctaaaaacata--gtcatcaaacaagtgcttatccaacaagaagcaaccacaactcaaggttgaac 100  Q
    |||||||||||||||||||| |||||||||||||||||||| |||  ||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  6823236 gaaaatacaaggaaagatgccggaaacacatcggctaaaaaaatatagtcatcaaacaagagcttatccaacaagaagcaaccacaactcaaggttgaac 6823335  T
Q  101 caattgaaggaagaagcatcaatgcaacgcttaaccaccatctggtagaagcaatcatcaacaaagccaattaaggcacaacgcttaaccat 192  Q
    ||||||||||||| |||||||| ||||||||||||||||||| ||||||||| |  ||| |||||||||   ||||||||||||||||||||    
T  6823336 caattgaaggaaggagcatcaaagcaacgcttaaccaccatccggtagaagccaatatccacaaagccataaaaggcacaacgcttaaccat 6823427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 176 - 215
Target Start/End: Original strand, 6823540 - 6823579
Alignment:
Q  176 gcacaacgcttaaccattcatgacggaagcttatcaacat 215  Q
    |||||||||||||||||||||| | |||||||||||||||    
T  6823540 gcacaacgcttaaccattcatgccagaagcttatcaacat 6823579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 123; Significance: 2e-63; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 17 - 191
Target Start/End: Original strand, 35267719 - 35267893
Alignment:
Q  17 agatgctggaaacacatcggctaaaaacatagtcatcaaacaagtgcttatccaacaagaagcaaccacaactcaaggttgaaccaattgaaggaagaag 116  Q
    |||||| ||||||||||||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||  |||||||| ||||    
T  35267719 agatgccggaaacacatcggctaaaagcaaagtcatcaaacaagtgcttatccaacaagaagaaaccacaactcaaggtttaaccgcttgaaggatgaag 35267818  T
Q  117 catcaatgcaacgcttaaccaccatctggtagaagcaatcatcaacaaagccaattaaggcacaacgcttaacca 191  Q
    |||||| ||||||||||||||||||| || |||||||||||||||||| ||||||||||||||||| ||||||||    
T  35267819 catcaaagcaacgcttaaccaccatccggcagaagcaatcatcaacaatgccaattaaggcacaacacttaacca 35267893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 65 - 192
Target Start/End: Original strand, 9906100 - 9906226
Alignment:
Q  65 tatccaacaagaagcaaccacaactcaaggttgaaccaattgaaggaagaagcatcaatgcaacgcttaaccaccatctggtagaag-caatcatcaaca 163  Q
    |||||||||||| | ||||||||||||||||  || || ||| ||  ||||||| |||  |||||||||||||||||| |||||||| |||||| |||||    
T  9906100 tatccaacaagaggaaaccacaactcaaggtgtaatcacttggag--agaagcaacaaaccaacgcttaaccaccatccggtagaagccaatcaacaaca 9906197  T
Q  164 aagccaattaaggcacaacgcttaaccat 192  Q
    |||||    ||||||||||||||||||||    
T  9906198 aagccttaaaaggcacaacgcttaaccat 9906226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 102 - 192
Target Start/End: Original strand, 18703387 - 18703478
Alignment:
Q  102 aattgaaggaagaagcatcaatgcaacgcttaaccaccatctggtagaag-caatcatcaacaaagccaattaaggcacaacgcttaaccat 192  Q
    ||||| ||||||||||| |||  |||||||||||||||||| |||||||| |||||||||||| ||||    ||||||||||||||||||||    
T  18703387 aattggaggaagaagcaacaaaccaacgcttaaccaccatccggtagaagccaatcatcaacagagccttaaaaggcacaacgcttaaccat 18703478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 178 - 219
Target Start/End: Original strand, 35267989 - 35268030
Alignment:
Q  178 acaacgcttaaccattcatgacggaagcttatcaacatggct 219  Q
    |||||||||||||||||||||| |||||||||||||||||||    
T  35267989 acaacgcttaaccattcatgacagaagcttatcaacatggct 35268030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 215
Target Start/End: Original strand, 18703515 - 18703549
Alignment:
Q  181 acgcttaaccattcatgacggaagcttatcaacat 215  Q
    ||||||||||||||||||| |||||||||||||||    
T  18703515 acgcttaaccattcatgacagaagcttatcaacat 18703549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 115; Significance: 1e-58; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 3 - 192
Target Start/End: Complemental strand, 34512746 - 34512552
Alignment:
Q  3 gaaaatacaaggaaagatgctggaaacacatcggctaaaaa-----catagtcatcaaacaagtgcttatccaacaagaagcaaccacaactcaaggttg 97  Q
    |||||||||||||||||||| ||||||||||||||||||||     |||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  34512746 gaaaatacaaggaaagatgccggaaacacatcggctaaaaaaaaaacatagtcatcaagcaagtgcttatccaacaagaagcaaccacaactcaaggttg 34512647  T
Q  98 aaccaattgaaggaagaagcatcaatgcaacgcttaaccaccatctggtagaagcaatcatcaacaaagccaattaaggcacaacgcttaaccat 192  Q
    ||||||||||| |||| |||||||| ||||||||||||||||||| ||||||||| |  ||  |||||||||   |||||| |||||||||||||    
T  34512646 aaccaattgaatgaaggagcatcaaagcaacgcttaaccaccatccggtagaagccaatattcacaaagccataaaaggcataacgcttaaccat 34512552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 3 - 192
Target Start/End: Complemental strand, 41832525 - 41832335
Alignment:
Q  3 gaaaatacaaggaaagatgctggaaacacatcggctaaaaacatagtcatcaaacaagtgcttatccaacaagaagcaaccacaactcaaggttg-aacc 101  Q
    ||||||||||||||||||||  |||| |||| ||| || ||||||  || ||| ||| |||||||||||||||| | ||||||||||||||| || ||||    
T  41832525 gaaaatacaaggaaagatgccagaaatacattggccaagaacataa-caacaatcaaatgcttatccaacaagaggaaaccacaactcaagggtgtaacc 41832427  T
Q  102 aattgaaggaagaagcatcaatgcaacgcttaaccaccatctggtagaag-caatcatcaacaaagccaattaaggcacaacgcttaaccat 192  Q
    | ||| ||||||||||| |||  ||||||||||||||||||||||||||| |||||||||||||||||    ||||||||||||||||||||    
T  41832426 acttggaggaagaagcaacaaaccaacgcttaaccaccatctggtagaagccaatcatcaacaaagccttaaaaggcacaacgcttaaccat 41832335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 7737201 - 7737011
Alignment:
Q  1 atgaaaatacaaggaaagatgctggaaacacatcggctaaaaacatagtcatcaaacaagtgcttatccaacaagaagcaaccacaactcaaggttgaac 100  Q
    |||||||||||| ||||||||| ||||| |||||| | || | |||||  | ||| ||| ||||||| |||||||| | ||||||||||||||||| |||    
T  7737201 atgaaaatacaaagaaagatgccggaaatacatcgaccaagagcatagaaa-caaccaaatgcttattcaacaagaggaaaccacaactcaaggtttaac 7737103  T
Q  101 caattgaaggaagaagcatcaatgcaacgcttaaccaccatctggtagaagcaatcatcaacaaagccaattaaggcacaacgcttaaccat 192  Q
    || ||| ||||||||||| |||  |||||||||||  ||||| | ||||||| | |||| ||||||||| | |||||||||| |||||||||    
T  7737102 cacttggaggaagaagcaacaaaacaacgcttaactgccatccgatagaagccaacatccacaaagccattgaaggcacaacacttaaccat 7737011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 46 - 191
Target Start/End: Original strand, 219305 - 219448
Alignment:
Q  46 tagtcatcaaacaagtgcttatccaacaagaagcaaccacaactcaaggttgaaccaattgaaggaagaagcatcaatgcaacgcttaaccaccatctgg 145  Q
    ||||||||||  ||||||||||||||||||||| ||| ||||||||||||| ||||  |||||| || || || |||  ||||| |||||||||||||||    
T  219305 tagtcatcaagaaagtgcttatccaacaagaagaaac-acaactcaaggtttaaccgcttgaagaaaaaa-caacaaatcaacgtttaaccaccatctgg 219402  T
Q  146 tagaagcaatcatcaacaaagccaattaaggcacaacgcttaacca 191  Q
     |||||   |||||||||||| |||||| || ||||||||||||||    
T  219403 cagaagttgtcatcaacaaagacaattaggggacaacgcttaacca 219448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 176 - 215
Target Start/End: Complemental strand, 34512473 - 34512434
Alignment:
Q  176 gcacaacgcttaaccattcatgacggaagcttatcaacat 215  Q
    |||||||||||||||||||||||| ||||||||| |||||    
T  34512473 gcacaacgcttaaccattcatgacagaagcttattaacat 34512434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 23612210 - 23612133
Alignment:
Q  1 atgaaaatacaaggaaagatgctggaaacacatcggctaaaaacatagtcatcaaacaagtgcttatccaacaagaag 78  Q
    ||||||| ||||||| | |||| ||||| |||||| | ||||||||||||| ||| ||| | ||||||||||| ||||    
T  23612210 atgaaaacacaaggagaaatgccggaaatacatcgaccaaaaacatagtcaacaaccaaatacttatccaacatgaag 23612133  T

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Target: scaffold1412 (Bit Score: 106; Significance: 3e-53; HSPs: 2)
Name: scaffold1412
Description:

Target: scaffold1412; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 39 - 192
Target Start/End: Original strand, 2 - 155
Alignment:
Q  39 aaaaacatagtcatcaaacaagtgcttatccaacaagaagcaaccacaactcaaggttgaaccaattgaaggaagaagcatcaatgcaacgcttaaccac 138  Q
    ||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||    
T  2 aaaaatatagtcatcaaacaagagcttatccaacaagaagcaaccacaactcaaggttgaaccaattgaaggaaggagcatcaaagcaacgcttaaccac 101  T
Q  139 catctggtagaagcaatcatcaacaaagccaattaaggcacaacgcttaaccat 192  Q
    |||| ||||||||| |  ||| |||||||||   ||||||||||||||||||||    
T  102 catccggtagaagccaatatccacaaagccataaaaggcacaacgcttaaccat 155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1412; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 176 - 215
Target Start/End: Original strand, 268 - 307
Alignment:
Q  176 gcacaacgcttaaccattcatgacggaagcttatcaacat 215  Q
    |||||| ||||||||||||||||| |||||||||||||||    
T  268 gcacaatgcttaaccattcatgacagaagcttatcaacat 307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 92; Significance: 7e-45; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 5444612 - 5444422
Alignment:
Q  1 atgaaaatacaaggaaagatgctggaaacacatcggctaaaaacatagtcatcaaacaagtgcttatccaacaagaagcaaccacaactcaaggttgaac 100  Q
    ||||||||||||| |||||||| ||||| |||||||| || | ||||| || ||| ||| |||||||||||||||| | |||||||||||||||| |||     
T  5444612 atgaaaatacaagtaaagatgccggaaatacatcggccaagagcatag-caacaaccaaatgcttatccaacaagaggaaaccacaactcaaggtggaat 5444514  T
Q  101 caattgaaggaagaagcatcaatgcaacgcttaaccaccatctggtagaagcaatcatcaacaaagccaattaaggcacaacgcttaaccat 192  Q
    || ||| ||||||||||| ||| ||||||||||||||||||| ||||||||| | ||||||||||||||   ||||||||||||||||||||    
T  5444513 catttggaggaagaagcaacaaagcaacgcttaaccaccatccggtagaagccaacatcaacaaagccataaaaggcacaacgcttaaccat 5444422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 61 - 192
Target Start/End: Complemental strand, 11814977 - 11814847
Alignment:
Q  61 tgcttatccaacaagaagcaaccacaactcaaggttgaaccaattgaaggaagaagcatcaatgcaacgcttaaccaccatctggtagaagcaatcatca 160  Q
    |||||||||||| ||| | ||||||||||||||||| ||||  |||| | |||||||| |||  ||||||||||||||||| |||||||||||| ||       
T  11814977 tgcttatccaaccagaggaaaccacaactcaaggtttaaccgcttgatg-aagaagcaacaaaacaacgcttaaccaccatatggtagaagcaagcaagc 11814879  T
Q  161 acaaagccaattaaggcacaacgcttaaccat 192  Q
    |||||||||   ||| ||||||||||||||||    
T  11814878 acaaagccataaaagacacaacgcttaaccat 11814847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 180 - 221
Target Start/End: Complemental strand, 5444386 - 5444345
Alignment:
Q  180 aacgcttaaccattcatgacggaagcttatcaacatggctga 221  Q
    |||||||||||||||||||||||||| |||||||||||||||    
T  5444386 aacgcttaaccattcatgacggaagcgtatcaacatggctga 5444345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 216
Target Start/End: Original strand, 55850266 - 55850304
Alignment:
Q  178 acaacgcttaaccattcatgacggaagcttatcaacatg 216  Q
    ||||||||||||||||||||| |||||| ||||||||||    
T  55850266 acaacgcttaaccattcatgatggaagcatatcaacatg 55850304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 91; Significance: 3e-44; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 3 - 192
Target Start/End: Complemental strand, 24039377 - 24039188
Alignment:
Q  3 gaaaatacaaggaaagatgctggaaacacatcggctaaaaacatagtcatcaaacaagtgcttatccaacaagaagcaaccacaactcaaggttgaacca 102  Q
    ||||||||||||||||||||| |||| |||| ||| || ||||||| || ||| ||| |||||||||||||||| | ||||||||||||||||  |||||    
T  24039377 gaaaatacaaggaaagatgctagaaatacattggccaagaacatag-caacaatcaaatgcttatccaacaagaggaaaccacaactcaaggtgtaacca 24039279  T
Q  103 attgaaggaagaagcatcaatgcaacgcttaaccaccatctggtagaag-caatcatcaacaaagccaattaaggcacaacgcttaaccat 192  Q
     ||| ||||||||||| |||  ||||||||||||||||||||||||||| |||||||||||||||||    ||||||||||||||||||||    
T  24039278 cttggaggaagaagcaacaaaccaacgcttaaccaccatctggtagaagccaatcatcaacaaagccttaaaaggcacaacgcttaaccat 24039188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 3 - 192
Target Start/End: Original strand, 31269681 - 31269870
Alignment:
Q  3 gaaaatacaaggaaagatgctggaaacacatcggctaaaaacatagtcatcaaacaagtgcttatccaacaagaagcaaccacaactcaaggttgaacca 102  Q
    ||||||||||||||||||||| |||| |||| ||| || ||||||| || ||| ||| |||||||||||||||| | ||||||||||||||||  |||||    
T  31269681 gaaaatacaaggaaagatgctagaaatacattggccaagaacatag-caacaatcaaatgcttatccaacaagaggaaaccacaactcaaggtgtaacca 31269779  T
Q  103 attgaaggaagaagcatcaatgcaacgcttaaccaccatctggtagaag-caatcatcaacaaagccaattaaggcacaacgcttaaccat 192  Q
     ||| ||||||||||| ||   ||||||||||||||||||||||||||| |||||||||||||||||    ||||||||||||||||||||    
T  31269780 cttggaggaagaagcaacagaccaacgcttaaccaccatctggtagaagccaatcatcaacaaagccttaaaaggcacaacgcttaaccat 31269870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 125 - 191
Target Start/End: Original strand, 36316583 - 36316650
Alignment:
Q  125 caacgcttaaccaccatctggtagaagcaatcatc-aacaaagccaattaaggcacaacgcttaacca 191  Q
    |||||||||||||||||||||||||||||| || | ||||||||||||||||||||||||||||||||    
T  36316583 caacgcttaaccaccatctggtagaagcaaacaaccaacaaagccaattaaggcacaacgcttaacca 36316650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 88; Significance: 2e-42; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 3 - 192
Target Start/End: Complemental strand, 21256539 - 21256349
Alignment:
Q  3 gaaaatacaaggaaagatgctggaaacacatcggctaaaaacatagtcatcaaacaagtgcttatccaacaagaagcaaccacaactcaaggttgaacca 102  Q
    ||||||||||||||||||||| |||| |||| ||| || ||||||| || ||| ||| |||||||||||||||| | ||||||||||||||||  |||||    
T  21256539 gaaaatacaaggaaagatgctagaaatacattggccaagaacatag-caacaatcaaatgcttatccaacaagaggaaaccacaactcaaggtgtaacca 21256441  T
Q  103 attgaaggaagaagcatcaatgcaacgcttaaccaccatctggtagaag-caatcatcaacaaagcc-aattaaggcacaacgcttaaccat 192  Q
     ||| ||||||||||| |||  ||||||||||||||||||||||||||| |||||||||||||||||  |  ||||||||||||||||||||    
T  21256440 cttggaggaagaagcaacaaaccaacgcttaaccaccatctggtagaagccaatcatcaacaaagccttaaaaaggcacaacgcttaaccat 21256349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 17823444 - 17823254
Alignment:
Q  1 atgaaaatacaaggaaagatgctggaaacacatcggctaaaaacatagtcatcaaacaagtgcttatccaacaagaagcaaccacaactcaaggttgaac 100  Q
    |||||||||||| || |||||||||||| ||||||||||||| |||||||| ||| ||| ||||||| |||||||||| ||||| || |||||||| |||    
T  17823444 atgaaaatacaatgagagatgctggaaatacatcggctaaaagcatagtcaacaagcaaatgcttattcaacaagaagaaaccataattcaaggtttaac 17823345  T
Q  101 caattgaaggaagaagcatcaatgcaacgcttaaccaccatctggtagaagcaatcatcaacaaagccaattaaggcacaacgcttaacca 191  Q
    || ||| ||||||||||| |||  |||| ||||| ||||||     ||||   ||||||||||||||| ||||||||||||||||||||||    
T  17823344 cacttggaggaagaagcaacaaatcaacccttaatcaccattcaacagaaattatcatcaacaaagccgattaaggcacaacgcttaacca 17823254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 41949583 - 41949773
Alignment:
Q  1 atgaaaatacaaggaaagatgctggaaacacatcggctaaaaacatagtcatcaaacaagtgcttatccaacaagaagcaaccacaactcaaggttgaac 100  Q
    |||||||||||||||||||||| ||||| | |||||| || |  | || || ||| ||| |||||||||||||||| | ||||||||||||| ||  |||    
T  41949583 atgaaaatacaaggaaagatgccggaaatatatcggccaagagaagag-cagcaaccaaatgcttatccaacaagaggaaaccacaactcaatgtgtaac 41949681  T
Q  101 caattgaaggaagaagcatcaatgcaacgcttaaccaccatctggtagaagcaatcatcaacaaagccaattaaggcacaacgcttaaccat 192  Q
    || ||| ||||||||||| |||  |||| ||||||||||||| ||||||||| | |||| |||||||||   ||||||||||||||||||||    
T  41949682 cacttggaggaagaagcaacaaaccaacacttaaccaccatccggtagaagccaacatcgacaaagccataaaaggcacaacgcttaaccat 41949773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 125 - 192
Target Start/End: Original strand, 35304957 - 35305024
Alignment:
Q  125 caacgcttaaccaccatctggtagaagcaatcatcaacaaagccaattaaggcacaacgcttaaccat 192  Q
    |||||||||||||||||| ||||||||||| || | |||||||||   ||||||||||||||||||||    
T  35304957 caacgcttaaccaccatccggtagaagcaaacaaccacaaagccataaaaggcacaacgcttaaccat 35305024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 118
Target Start/End: Original strand, 15543938 - 15544014
Alignment:
Q  42 aacatagtcatcaaacaagtgcttatccaacaagaagcaaccacaactcaaggttgaaccaattgaaggaagaagca 118  Q
    |||||||||||||| | | |||||||||||||| ||| |||||||||| |||||| | ||  ||| |||||||||||    
T  15543938 aacatagtcatcaagcgaatgcttatccaacaaaaagaaaccacaacttaaggtttacccgcttggaggaagaagca 15544014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 95
Target Start/End: Complemental strand, 43233753 - 43233662
Alignment:
Q  3 gaaaatacaaggaaagatgctggaaacacatcggctaaaaacatagtcatcaaacaagtgcttatccaacaagaagcaaccacaactcaaggt 95  Q
    |||||||||||||||||| | ||||| |||||| | || |  |||| || ||| ||| |||||||||||||||| | ||||||||||||||||    
T  43233753 gaaaatacaaggaaagataccggaaatacatcgaccaagagaatag-caacaaccaaatgcttatccaacaagaggaaaccacaactcaaggt 43233662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 216
Target Start/End: Original strand, 35305105 - 35305143
Alignment:
Q  178 acaacgcttaaccattcatgacggaagcttatcaacatg 216  Q
    |||||||||||| ||||||||||||||| ||||||||||    
T  35305105 acaacgcttaactattcatgacggaagcatatcaacatg 35305143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0525 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: scaffold0525
Description:

Target: scaffold0525; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 3 - 152
Target Start/End: Original strand, 2248 - 2396
Alignment:
Q  3 gaaaatacaaggaaagatgctggaaacacatcggctaaaaacatagtcatcaaacaagtgcttatccaacaagaagcaaccacaactcaaggttgaacca 102  Q
    |||| |||||||||||||| |||||| |||| ||| || ||||||| || ||| ||| |||||||||||||||| | ||||||||||||||||  || ||    
T  2248 gaaagtacaaggaaagatgttggaaatacattggccaagaacatag-caacaatcaaatgcttatccaacaagaggaaaccacaactcaaggtgtaatca 2346  T
Q  103 attgaaggaagaagcatcaatgcaacgcttaaccaccatctggtagaagc 152  Q
     ||| ||||||||||| |||  |||||||||||||||||| |||||||||    
T  2347 cttggaggaagaagcaacaaaccaacgcttaaccaccatccggtagaagc 2396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0263 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 22812 - 22628
Alignment:
Q  1 atgaaaatacaaggaaagatgctggaaacacatcggctaaaaacatagtcatcaaacaagtgcttatccaacaagaagcaaccacaactcaaggttgaac 100  Q
    |||||||||||||| ||||||| ||||| |||||||| || | ||||| || ||| ||| |||||||||||||||| | ||||||||||||       ||    
T  22812 atgaaaatacaaggtaagatgccggaaatacatcggccaagagcatag-caacaaccaaatgcttatccaacaagaggaaaccacaactca------gac 22720  T
Q  101 caattgaaggaagaagcatcaatgcaacgcttaaccaccatctggtagaagcaatcatcaacaaagccaattaaggcacaacgcttaaccat 192  Q
    || ||| ||||||||||| |||  |||||||||||||||||| ||| ||||| | |||| |||||||||   ||| ||||||||||||||||    
T  22719 cacttggaggaagaagcaacaaaccaacgcttaaccaccatccggtggaagccaacatcgacaaagccataaaagacacaacgcttaaccat 22628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0862 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0862
Description:

Target: scaffold0862; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 95
Target Start/End: Complemental strand, 141 - 49
Alignment:
Q  3 gaaaatacaaggaaagatgctggaaacacatcggctaaaaacatagtcatcaaacaagtgctta-tccaacaagaagcaaccacaactcaaggt 95  Q
    |||||||||||||||||||| ||||| |||| ||| || ||||||| || ||| ||| |||||| ||||||||||   ||||||||||||||||    
T  141 gaaaatacaaggaaagatgccggaaatacattggccaagaacatag-caacaatcaaatgcttactccaacaagagaaaaccacaactcaaggt 49  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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