View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10565_low_3 (Length: 454)
Name: NF10565_low_3
Description: NF10565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10565_low_3 |
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| [»] chr5 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 1 - 454
Target Start/End: Complemental strand, 31925406 - 31924943
Alignment:
| Q |
1 |
taagggtgtgcagtgagcatgagagtgaaggttttgagaagattgttt--gtttttctgagtttacgaaccattgaaagatagagaacaaagaaggctgc |
98 |
Q |
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| T |
31925406 |
taagggtgtgcagtgagcatgagagtgaaggttttgagaagattgttttagtttttctgagtttaggaaccattgaaagatagagaacaaagaaggctgc |
31925307 |
T |
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| Q |
99 |
aagagaatcaaagacctaaacatggtaaaacataggaagttatgatcttcatagatttacctttatttttcttactttatttaacctctcttcaaattac |
198 |
Q |
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||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||| |||||||||||||||||||||||||||||||||||||| ||| |
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| T |
31925306 |
aagagaatcaaagacctaaacatggtaaaacttaggaagtaatgatgttcatagattcacctttatttttcttactttatttaacctctcttcaaagtac |
31925207 |
T |
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| Q |
199 |
tattcaaacccccactgtcacaatctacacacacctcctaagataagcaacctaccattccatnnnnnnnnnnnnnnntcacctttctataatttttcta |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |||||||||||||||| |
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| T |
31925206 |
tattcaaacccccactgtcacaatctacacacacctcctaagataagcaacctacccttccataaaaaaacaaaaaaatcaccattctataatttttcta |
31925107 |
T |
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| Q |
299 |
ctctttctagctacctgcataaagtagtgtgagagttgaaaaaaggggtgtgaagtgtgaagtg---------aagagtggtttttctatattnnnnnnn |
389 |
Q |
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| T |
31925106 |
ctctttctagctacctgcataaagtagtgtgagagttgaaaaaaggggtgtgaagtgtgaaatgtgaagtgaaaagagtggtttttctatatt-aaaaaa |
31925008 |
T |
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| Q |
390 |
nnngggtaaaagttaggtatttgtttagcttaatacttgcatggaatatgcaaagtttgaatatg |
454 |
Q |
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| T |
31925007 |
aaagggtaaaagttaggtatttgtttagcttaatacttgcatggaatatgcaaagtttgaatatg |
31924943 |
T |
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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 401 - 454
Target Start/End: Original strand, 49384886 - 49384939
Alignment:
| Q |
401 |
gttaggtatttgtttagcttaatacttgcatggaatatgcaaagtttgaatatg |
454 |
Q |
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| T |
49384886 |
gttaggtatttgtttagcttaatactttcatgaaacgtgcaaagcctgaatatg |
49384939 |
T |
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