View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10565_low_4 (Length: 449)
Name: NF10565_low_4
Description: NF10565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10565_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 393; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 1 - 437
Target Start/End: Original strand, 44170524 - 44170959
Alignment:
| Q |
1 |
tatgtcattaggtttgcacattatttgaccaaatgctaccaaactacagatcgttaagatatttctaactgatgtttaatggttgttgcttattcaaagt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44170524 |
tatgtcattaggtttgcacattatttgaccaaatgctaccaaactacagatcgttaagatatttctaactgatgtttaatggttgttgcttattcaaagt |
44170623 |
T |
|
| Q |
101 |
aatttctcccttcgagacacgaaaggtggaaacatattgttgcccttgatagtttaatgcattcttttcctcttagccttcaatacattccttccctttt |
200 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
44170624 |
aatttctccctttgagacacgaaaggtggaaacatattgttgcccttgatagtttaatacattcttttcctcttagccttcaatacattccttccctttt |
44170723 |
T |
|
| Q |
201 |
attagtaggtttggttagactttcactttgtctgtgcattcctttccttttaactacacttttacaaattacatgaaactgaaagttgtttttccactcc |
300 |
Q |
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|||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
44170724 |
attattaggtttggttagactttcactttgtctgtgcatccctttccttttaactacacttttacaaattacatgaaactgaaagttgtctttccactcc |
44170823 |
T |
|
| Q |
301 |
taggattagaagtcatcagttgattattacttgattacttgatgaggcaaaggagcaaatagaccacaactgatgtaggctatctgatatctttttgcaa |
400 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||| |
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| T |
44170824 |
taggtttagaagtcatcagttgattattacttgattacttgatgaggcaaaggagcaaatagaccacaactgctgtaggctatttgatatctttttgcaa |
44170923 |
T |
|
| Q |
401 |
acataccacatttgttattttttctctccttttctct |
437 |
Q |
| |
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||||||||||||||||||||||| |||| |||||||| |
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| T |
44170924 |
acataccacatttgttatttttt-tctctttttctct |
44170959 |
T |
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