View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10565_low_6 (Length: 388)
Name: NF10565_low_6
Description: NF10565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10565_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 362; Significance: 0; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 1 - 370
Target Start/End: Complemental strand, 39840138 - 39839769
Alignment:
| Q |
1 |
attggggcttagggtttgttgaatttctcaaaatccctaagccacaattctctacagtggaacacattattatcatcttccattaacaaacaatattgag |
100 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39840138 |
attggggcttagggtttgttcaatttctcaaaatccctaagccacaattctctacagtggaacacattattatcatcttccattaacaaacaatattgag |
39840039 |
T |
|
| Q |
101 |
aatagtgaatgaaacataacgaacgaacaacagaacaatataaatgttaaactcactcaccaggtggtgaccttcgagcacgaaaactcaatagacgaag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
39840038 |
aatagtgaatgaaacataacgaacgaacaacagaacaatataaatgttaaactcactcaccaggtggtgaccttcgagcacgaagactcaatagacgaag |
39839939 |
T |
|
| Q |
201 |
acgaaatctgctgactatttccgaggcggtaagatcagcagaagacgaagacgaaggatgatgttgcattttttgaagtgcgtctgagagtttgttcaat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39839938 |
acgaaatctgctgactatttccgaggcggtaagatcagcagaagacgaagacgaaggatgatgttgcattttttgaagtgcgtctgagagtttgttcaat |
39839839 |
T |
|
| Q |
301 |
tccatttctcaaaatccctaagcgggccccaattcacagaacaggcaagaaaatgaaaattattatgaat |
370 |
Q |
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| T |
39839838 |
tccatttctcaaaatccctaagcgggccccaattcacagaacaggcaagaaaatgaaaattattatgaat |
39839769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 1 - 308
Target Start/End: Original strand, 44798270 - 44798584
Alignment:
| Q |
1 |
attggggcttagggtttgttgaatttctcaaaatccctaag-ccacaattctctacagtggaacacattattatcatcttccattaacaaacaatattga |
99 |
Q |
| |
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|||||||||||||||||||| |||||||||||||||||||| || |||||| |||| ||||||| ||||||||||||||||||||||||| ||||| |
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| T |
44798270 |
attggggcttagggtttgttcaatttctcaaaatccctaagcccccaattc---acagcggaacac---attatcatcttccattaacaaacaacattga |
44798363 |
T |
|
| Q |
100 |
gaatagtgaatgaaacataacgaacgaacaacagaacaatataaatgttaaactcactcacca---ggtggtgaccttcgagcacgaaaactcaatagac |
196 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| |
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| T |
44798364 |
gaatagtgaatgaaacataacgaacgaacaacagaacaatataaatgttaaactcactcaccaggtggtggtgaccttcgagcacgaagactcaatagac |
44798463 |
T |
|
| Q |
197 |
gaagacgaaatctgctgactatttcc---gaggcggtaagatcagca------gaagacgaagacgaaggatgatgttgcattttttgaagtgcgtctga |
287 |
Q |
| |
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|||||||||||||||||||||||||| | || |||| || ||||| ||||||||||||||||||||||||| ||||||||||||| |||||| |
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| T |
44798464 |
gaagacgaaatctgctgactatttccaagggggtggtaggagcagcagaagacgaagacgaagacgaaggatgatgttccattttttgaagtaagtctga |
44798563 |
T |
|
| Q |
288 |
gagtttgttcaattccatttc |
308 |
Q |
| |
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||||||||||||||||||||| |
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| T |
44798564 |
gagtttgttcaattccatttc |
44798584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 35161841 - 35161583
Alignment:
| Q |
1 |
attggggcttagggtttgttgaatttctcaaaatccctaagccacaattctctacagtggaacacattattatcatcttccattaacaaacaatattgag |
100 |
Q |
| |
|
|||||||||||||||||||| |||| ||||||||||||||||| |||||||||| ||||||||||||||| |||||||||||||||||||| |||||| |
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| T |
35161841 |
attggggcttagggtttgttcaattactcaaaatccctaagccccaattctctaaagtggaacacattat---catcttccattaacaaacaacattgag |
35161745 |
T |
|
| Q |
101 |
aatagtgaatgaaacataacgaacgaacaacagaacaatataaatgttaaactcactcaccaggt---ggtgaccttcgagcacgaaaactcaatagacg |
197 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| ||| |
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| T |
35161744 |
aatagtgaatgaaacataacgaacgaacaacagaacaatataaatgttaaactcactcaccaggtggtggtgaccttcgagcacgaagactcaatacacg |
35161645 |
T |
|
| Q |
198 |
aagacgaaatctgctgactatttccga---ggcggtaagatcagcagaagacgaagacgaag |
256 |
Q |
| |
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||||||||||||||||||||||||||| || |||| || ||||||||||||||||||||| |
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|
| T |
35161644 |
aagacgaaatctgctgactatttccgagggggtggtaggagcagcagaagacgaagacgaag |
35161583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 132 - 306
Target Start/End: Complemental strand, 39844923 - 39844740
Alignment:
| Q |
132 |
agaacaatataaatgttaaactcactcaccaggtggtg---accttcgagca------cgaaaactcaatagacgaagacgaaatctgctgactatttcc |
222 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||| ||||||||||| | || || ||||||||||||| ||||||||||||||||| |
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| T |
39844923 |
agaataatataaatgttaaactcactcaccaggtggtggtgaccttcgagcaaatggaccaagacgagatagacgaagacggtatctgctgactatttcc |
39844824 |
T |
|
| Q |
223 |
gaggcggtaagatcagcagaagacgaagacgaaggatgatgttgcattttttgaagtgcgtctgagagtttgttcaattccatt |
306 |
Q |
| |
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||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | ||| ||||||||||||||||| |
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| T |
39844823 |
gagtcggtaagatcagcaaaagacgaagacgaaggatgatgttgcattttttgaagtgcgaccgagggtttgttcaattccatt |
39844740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 22 - 86
Target Start/End: Complemental strand, 39845024 - 39844963
Alignment:
| Q |
22 |
aatttctcaaaatccctaagccacaattctctacagtggaacacattattatcatcttccattaa |
86 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
39845024 |
aatttctcaaaatccctaagccccaattctctacagtggaacaca---ttatcatcttccattaa |
39844963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 250 - 290
Target Start/End: Original strand, 44631184 - 44631224
Alignment:
| Q |
250 |
gacgaaggatgatgttgcattttttgaagtgcgtctgagag |
290 |
Q |
| |
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||||||||| ||||||||||||||||| || |||||||||| |
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| T |
44631184 |
gacgaaggaggatgttgcattttttgatgtacgtctgagag |
44631224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 250 - 290
Target Start/End: Original strand, 44798164 - 44798204
Alignment:
| Q |
250 |
gacgaaggatgatgttgcattttttgaagtgcgtctgagag |
290 |
Q |
| |
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||||||||| ||||||||||||||||| || |||||||||| |
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| T |
44798164 |
gacgaaggaggatgttgcattttttgatgtacgtctgagag |
44798204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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