View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10565_low_7 (Length: 357)
Name: NF10565_low_7
Description: NF10565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10565_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-112; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 19 - 236
Target Start/End: Original strand, 26829069 - 26829286
Alignment:
| Q |
19 |
gtctaatctcgtgttcgtcggacttaggaaaagctatggggttgccgtatactatgcattgggtggggagtctacaactaacaagtgtggatttcaaatt |
118 |
Q |
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| T |
26829069 |
gtctaatctcgtgttcgtcggacttaggaaaagctatggggttgccgtatactatgcattgggtggggagtctacaactaacaagtgtggatttcaaatt |
26829168 |
T |
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| Q |
119 |
ggatgtgccaagaaggttgtagactattacagtaaaggaagtaacgatatcttcgagtttggagcaattatcgatgaatgtaggtgttgttgtaaattgt |
218 |
Q |
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| T |
26829169 |
ggatgtgccaagaaggttgtagactattacagtaaaggaagtaacgatatcttcgagtttggagcaattatcgatgaatgtaggcgttgctgtaaattgt |
26829268 |
T |
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| Q |
219 |
tttttgcaaactctaagg |
236 |
Q |
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|||||| ||||||||||| |
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| T |
26829269 |
tttttgaaaactctaagg |
26829286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 231 - 344
Target Start/End: Original strand, 26829523 - 26829641
Alignment:
| Q |
231 |
ctaaggttgagttctctcaga-----acgaataaggatgctcatacttttgttcgagaaacctttttcttagctagtctccacgtgtttgatgaggcacc |
325 |
Q |
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| T |
26829523 |
ctaagattgagttctctcagagacggacgaataaagacgctcatacttttgttcgagaaacctttttcttagctagtctccatctgtttgatgaggcacc |
26829622 |
T |
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| Q |
326 |
accaccatgtatctggtct |
344 |
Q |
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| T |
26829623 |
accaccatgtatctggtct |
26829641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 70 - 202
Target Start/End: Original strand, 13925654 - 13925784
Alignment:
| Q |
70 |
ctatgcattgggtggggagtctacaactaacaagtgtggatttcaaattggatgtgccaagaaggttgtagactattacagtaaaggaagtaacgatatc |
169 |
Q |
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| T |
13925654 |
ctattcattgggtgcgcaatctacaacttacaaatgtggactttgaattagatg--caaagaaggttgtagattattataatagaggaagcaatgacatc |
13925751 |
T |
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| Q |
170 |
ttcgagtttggagcaattatcgatgaatgtagg |
202 |
Q |
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| T |
13925752 |
tccgagtttggagcaattatcaatgagtgtagg |
13925784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 70 - 202
Target Start/End: Original strand, 12204790 - 12204920
Alignment:
| Q |
70 |
ctatgcattgggtggggagtctacaactaacaagtgtggatttcaaattggatgtgccaagaaggttgtagactattacagtaaaggaagtaacgatatc |
169 |
Q |
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| T |
12204790 |
ctattcattgggtgcgcaatctacaacttacaaatgtggactttgaattagatg--caaagaaggttgtagattattataatagaggaagcaatgacatc |
12204887 |
T |
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| Q |
170 |
ttcgagtttggagcaattatcgatgaatgtagg |
202 |
Q |
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| T |
12204888 |
tccgagtttggagcaattatcaatgagtgtagg |
12204920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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