View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10565_low_8 (Length: 352)

Name: NF10565_low_8
Description: NF10565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10565_low_8
NF10565_low_8
[»] chr4 (12 HSPs)
chr4 (12-210)||(20978588-20978786)
chr4 (265-335)||(20976576-20976646)
chr4 (220-331)||(40932941-40933051)
chr4 (221-323)||(934456-934560)
chr4 (236-335)||(40018202-40018301)
chr4 (220-290)||(38903776-38903848)
chr4 (225-331)||(49738567-49738675)
chr4 (223-331)||(47147528-47147636)
chr4 (240-269)||(20977938-20977967)
chr4 (220-290)||(51841256-51841328)
chr4 (243-331)||(49686870-49686958)
chr4 (241-325)||(54470382-54470466)
[»] chr1 (7 HSPs)
chr1 (220-335)||(16822034-16822150)
chr1 (220-331)||(30396746-30396859)
chr1 (266-331)||(16943355-16943420)
chr1 (222-331)||(43934347-43934458)
chr1 (241-297)||(52482433-52482489)
chr1 (220-288)||(15577570-15577640)
chr1 (241-331)||(52073065-52073155)
[»] chr3 (6 HSPs)
chr3 (220-331)||(11284144-11284253)
chr3 (249-309)||(39535439-39535499)
chr3 (220-290)||(37598228-37598300)
chr3 (238-325)||(659697-659784)
chr3 (220-331)||(46431696-46431809)
chr3 (241-322)||(46367413-46367494)
[»] chr8 (3 HSPs)
chr8 (224-331)||(26055580-26055686)
chr8 (220-293)||(10108965-10109040)
chr8 (242-290)||(16715449-16715497)
[»] chr5 (4 HSPs)
chr5 (241-331)||(36123199-36123289)
chr5 (225-274)||(28005692-28005743)
chr5 (220-272)||(28186851-28186905)
chr5 (220-330)||(27998593-27998705)
[»] chr6 (1 HSPs)
chr6 (222-331)||(21870083-21870191)
[»] chr7 (4 HSPs)
chr7 (219-331)||(30914519-30914633)
chr7 (220-331)||(40830354-40830466)
chr7 (241-290)||(19262516-19262565)
chr7 (219-331)||(41483638-41483752)
[»] chr2 (3 HSPs)
chr2 (220-289)||(43832250-43832321)
chr2 (219-331)||(8197558-8197672)
chr2 (219-331)||(8202318-8202432)


Alignment Details
Target: chr4 (Bit Score: 179; Significance: 1e-96; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 12 - 210
Target Start/End: Complemental strand, 20978786 - 20978588
Alignment:
Q  12 ttattactattattgctactagtatctatcaaaaatttgcgtgtgttcagcaatttatagctagacctgacctgtacaaaaacatctatgggatgaagat 111  Q
    |||||| |||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  20978786 ttattagtattattgctaccagtatctatcaagaatttgcgtgtgttcagcaatttatagctagacctgacctgtacaaaaacatttatgggatgaagat 20978687  T
Q  112 gatggagtaatcatcactttaaaatatttcaaccatgtacaaaaacatttcaatttcaactaaatgtgtagacactaaattaaagtttacctttgataa 210  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20978686 gatggagtaatcaacactttaaaatatttcaaccatgtacaaaaacatttcaatttcaactaaatgtgtagacactaaattaaagtttacctttgataa 20978588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 265 - 335
Target Start/End: Complemental strand, 20976646 - 20976576
Alignment:
Q  265 atatgatatatgactgaacattatggtggcgttcggtccatgtaatcaaccccacttagtgagataaaact 335  Q
    ||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| ||||||||    
T  20976646 atatgatatatgactgaacattatggtggtgtttggtccatgtaatcaaccccacttagtgaaataaaact 20976576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 220 - 331
Target Start/End: Complemental strand, 40933051 - 40932941
Alignment:
Q  220 aagagaaactattaagagatttagagattaatgagtttgatatggatatgatatatgactgaacattatggtggcgttcggtccatgtaatcaaccccac 319  Q
    |||| ||||||||||| | | |||||||||||||||| |||| |||||||||||||||  ||||||||||| |||||| | | ||||||  | |||||||    
T  40933051 aagaaaaactattaaggg-tctagagattaatgagttggatagggatatgatatatgatagaacattatggcggcgtttgatgcatgtagccgaccccac 40932953  T
Q  320 ttagtgagataa 331  Q
    || ||| |||||    
T  40932952 ttggtgggataa 40932941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 221 - 323
Target Start/End: Complemental strand, 934560 - 934456
Alignment:
Q  221 agagaaactattaagagattt--agagattaatgagtttgatatggatatgatatatgactgaacattatggtggcgttcggtccatgtaatcaacccca 318  Q
    |||||||||||||||| | ||  ||||||||||||||| |||| || ||||||||||||  |||||||||||| |||||   ||||||||  | ||||||    
T  934560 agagaaactattaagaaagttctagagattaatgagttggatagggttatgatatatgatagaacattatggttgcgtttattccatgtagccgacccca 934461  T
Q  319 cttag 323  Q
    |||||    
T  934460 cttag 934456  T

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Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 236 - 335
Target Start/End: Complemental strand, 40018301 - 40018202
Alignment:
Q  236 agatttagagattaatgagtttgatatggatatgatatatgactgaacattatggtggcgttcggtccatgtaatcaaccccacttagtgagataaaact 335  Q
    |||| ||||||| |||||||| |||| |||||||||||||||  |||||||| || | |||| | ||||||||  | |||||||||||||  ||||||||    
T  40018301 agatctagagatcaatgagttggatagggatatgatatatgatagaacattacggcgtcgtttgatccatgtagccgaccccacttagtggaataaaact 40018202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 220 - 290
Target Start/End: Complemental strand, 38903848 - 38903776
Alignment:
Q  220 aagagaaactattaaga--gatttagagattaatgagtttgatatggatatgatatatgactgaacattatgg 290  Q
    |||||||||||||||||  ||  || ||||||||||||||||||  |||||||||||||||  ||||||||||    
T  38903848 aagagaaactattaagaaagacctaaagattaatgagtttgatagagatatgatatatgacataacattatgg 38903776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 225 - 331
Target Start/End: Complemental strand, 49738675 - 49738567
Alignment:
Q  225 aaactattaaga--gatttagagattaatgagtttgatatggatatgatatatgactgaacattatggtggcgttcggtccatgtaatcaaccccactta 322  Q
    ||||||||||||  ||| |||| ||||||||||| |||| || || |||||||||| ||||||||||| || ||| | ||||||||  | |||||| |||    
T  49738675 aaactattaagaaggatctagaaattaatgagttggatagggttaggatatatgacagaacattatggcggtgtttgatccatgtagccgaccccattta 49738576  T
Q  323 gtgagataa 331  Q
    ||| |||||    
T  49738575 gtgggataa 49738567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 223 - 331
Target Start/End: Original strand, 47147528 - 47147636
Alignment:
Q  223 agaaactattaaga--gatttagagattaatgagtttgatatggatatgatatatgactgaacattatggtggcgttcggtccatgtaatcaaccccact 320  Q
    ||||||||||||||  ||| |||||||||||||||| ||||  ||||||||||||||  |||||||||||    ||| | ||||||||| || ||||| |    
T  47147528 agaaactattaagaaagatctagagattaatgagttggata--gatatgatatatgatagaacattatggcattgtttgatccatgtaaccatccccaat 47147625  T
Q  321 tagtgagataa 331  Q
    ||||| |||||    
T  47147626 tagtgggataa 47147636  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 269
Target Start/End: Complemental strand, 20977967 - 20977938
Alignment:
Q  240 ttagagattaatgagtttgatatggatatg 269  Q
    ||||||||||||||||||||||||||||||    
T  20977967 ttagagattaatgagtttgatatggatatg 20977938  T

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Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 290
Target Start/End: Complemental strand, 51841328 - 51841256
Alignment:
Q  220 aagagaaactattaaga--gatttagagattaatgagtttgatatggatatgatatatgactgaacattatgg 290  Q
    |||||||||||||||||  |||||||| ||| | ||||| |||| |||||||||||||||   ||||||||||    
T  51841328 aagagaaactattaagaaggatttagaaattcaagagttggatagggatatgatatatgatacaacattatgg 51841256  T

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Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 331
Target Start/End: Original strand, 49686870 - 49686958
Alignment:
Q  243 gagattaatgagtttgatatggatatgatatatgactgaacattatggtggcgttcggtccatgtaatcaaccccacttagtgagataa 331  Q
    |||||||||||| | |||| |||||||||||||||  ||| ||||||| | |||| |  |||||||  | ||||||||||||| |||||    
T  49686870 gagattaatgagctggatagggatatgatatatgatggaatattatggcgtcgtttgaaccatgtagccgaccccacttagtgggataa 49686958  T

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Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 241 - 325
Target Start/End: Original strand, 54470382 - 54470466
Alignment:
Q  241 tagagattaatgagtttgatatggatatgatatatgactgaacattatggtggcgttcggtccatgtaatcaaccccacttagtg 325  Q
    |||||||||||||||| ||||   ||||| ||||||||||| |||||| | | | || | ||||||||  |||||||||||||||    
T  54470382 tagagattaatgagttggatagaaatatggtatatgactgagcattattgcgtcatttgatccatgtagccaaccccacttagtg 54470466  T

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Target: chr1 (Bit Score: 51; Significance: 4e-20; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 220 - 335
Target Start/End: Complemental strand, 16822150 - 16822034
Alignment:
Q  220 aagagaaactattaaga--gatttagagattaatgagtttgatatggatatgatatatgactgaacattatggtggcgttcggtccatgtaatcaacccc 317  Q
    ||||||||||| |||||  ||| |||||||||||||| | ||||  |||||||||||||| |||||||||||| ||| || |||||||||| || |||||    
T  16822150 aagagaaactagtaagaaagatgtagagattaatgagctggatagcgatatgatatatgattgaacattatggcggc-tttggtccatgtagtcgacccc 16822052  T
Q  318 acttagtgagataaaact 335  Q
    |||||||| |||||||||    
T  16822051 acttagtgggataaaact 16822034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 220 - 331
Target Start/End: Complemental strand, 30396859 - 30396746
Alignment:
Q  220 aagagaaactattaaga--gatttagagattaatgagtttgatatggatatgatatatgactgaacattatggtggcgttcggtccatgtaatcaacccc 317  Q
    |||||||||| ||||||  |||  ||||||||||||||| |||| ||||| |||||||||  |||||||||||||||||| | ||| ||||  |||||||    
T  30396859 aagagaaactgttaagaaggatccagagattaatgagttggatagggatacgatatatgatagaacattatggtggcgtttgatccgtgtagccaacccc 30396760  T
Q  318 acttagtgagataa 331  Q
    |||||||| |||||    
T  30396759 acttagtgggataa 30396746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 266 - 331
Target Start/End: Original strand, 16943355 - 16943420
Alignment:
Q  266 tatgatatatgactgaacattatggtggcgttcggtccatgtaatcaaccccacttagtgagataa 331  Q
    ||||||||||||  ||||||||||| |||||| | |||||||| || ||||||| |||||||||||    
T  16943355 tatgatatatgatagaacattatggcggcgtttgatccatgtagtcgaccccacctagtgagataa 16943420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 222 - 331
Target Start/End: Complemental strand, 43934458 - 43934347
Alignment:
Q  222 gagaaactattaaga--gatttagagattaatgagtttgatatggatatgatatatgactgaacattatggtggcgttcggtccatgtaatcaaccccac 319  Q
    |||||||||||||||  ||| || | |||||| |||| || | |||||||||| ||||  ||||||||||| |||||| | ||||||||   ||||||||    
T  43934458 gagaaactattaagaaggatctacaaattaattagttggaaagggatatgatagatgatagaacattatggcggcgtttgttccatgtagctaaccccac 43934359  T
Q  320 ttagtgagataa 331  Q
    |||||| |||||    
T  43934358 ttagtgggataa 43934347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 241 - 297
Target Start/End: Complemental strand, 52482489 - 52482433
Alignment:
Q  241 tagagattaatgagtttgatatggatatgatatatgactgaacattatggtggcgtt 297  Q
    |||||||||||||||| || | |||||||||||||||  ||||||||||| ||||||    
T  52482489 tagagattaatgagttggacagggatatgatatatgatggaacattatggcggcgtt 52482433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 220 - 288
Target Start/End: Original strand, 15577570 - 15577640
Alignment:
Q  220 aagagaaactattaaga--gatttagagattaatgagtttgatatggatatgatatatgactgaacattat 288  Q
    |||||||||||||||||  ||| |||||||||||||||| ||||  |||||||||| |||  |||||||||    
T  15577570 aagagaaactattaagaaggatatagagattaatgagttggatagagatatgatatttgatagaacattat 15577640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 241 - 331
Target Start/End: Complemental strand, 52073155 - 52073065
Alignment:
Q  241 tagagattaatgagtttgatatggatatgatatatgactgaacattatggtggcgttcggtccatgtaatcaaccccacttagtgagataa 331  Q
    |||||||||||||| | |||| || ||||||||||||  ||||||||||| |||| | | ||||||||  | ||||||||| ||| |||||    
T  52073155 tagagattaatgagctggatagggctatgatatatgatagaacattatggcggcgattgatccatgtagccgaccccacttggtgggataa 52073065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 220 - 331
Target Start/End: Original strand, 11284144 - 11284253
Alignment:
Q  220 aagagaaactattaagagatttagagattaatgagtttgatatggatatgatatatgactgaacattatggtggcgttcggtccatgtaatcaaccccac 319  Q
    |||||||||||||||||  | |||||||||||||||| |||||  ||||| ||||||| |||||||||| |   |||| | ||||||||  ||||||| |    
T  11284144 aagagaaactattaaga--tgtagagattaatgagttggatataaatatggtatatgattgaacattattgcatcgtttgatccatgtagccaaccccgc 11284241  T
Q  320 ttagtgagataa 331  Q
    ||||||||||||    
T  11284242 ttagtgagataa 11284253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 249 - 309
Target Start/End: Complemental strand, 39535499 - 39535439
Alignment:
Q  249 aatgagtttgatatggatatgatatatgactgaacattatggtggcgttcggtccatgtaa 309  Q
    |||||||| |||| |||||||||||||||  |||||||||||||||||| | |||||||||    
T  39535499 aatgagttggataaggatatgatatatgatagaacattatggtggcgtttgatccatgtaa 39535439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 220 - 290
Target Start/End: Complemental strand, 37598300 - 37598228
Alignment:
Q  220 aagagaaactattaagagattt--agagattaatgagtttgatatggatatgatatatgactgaacattatgg 290  Q
    ||||||||||||||||| || |  ||||||||||||||| |||| || ||||||||||||  |||||||||||    
T  37598300 aagagaaactattaagatatatctagagattaatgagttggataggggtatgatatatgatagaacattatgg 37598228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 238 - 325
Target Start/End: Original strand, 659697 - 659784
Alignment:
Q  238 atttagagattaatgagtttgatatggatatgatatatgactgaacattatggtggcgttcggtccatgtaatcaaccccacttagtg 325  Q
    ||||| ||||||||||||| |||| |||||| ||||||||  |||||||||||  | ||| | ||||||||  | |||||||||||||    
T  659697 atttacagattaatgagttggatagggatattatatatgatagaacattatggcagtgtttgatccatgtagccgaccccacttagtg 659784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 220 - 331
Target Start/End: Complemental strand, 46431809 - 46431696
Alignment:
Q  220 aagagaaactattaaga--gatttagagattaatgagtttgatatggatatgatatatgactgaacattatggtggcgttcggtccatgtaatcaacccc 317  Q
    ||||||||||||||| |  ||| |||||||||||||||| ||||  ||||| ||||||||  |||||||  || | |||| | |||||||   |||||||    
T  46431809 aagagaaactattaaaaaagatctagagattaatgagttggatagagatattatatatgatggaacattgaggcgtcgtttgatccatgtcgccaacccc 46431710  T
Q  318 acttagtgagataa 331  Q
    |||||||| |||||    
T  46431709 acttagtgggataa 46431696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 322
Target Start/End: Complemental strand, 46367494 - 46367413
Alignment:
Q  241 tagagattaatgagtttgatatggatatgatatatgactgaacattatggtggcgttcggtccatgtaatcaaccccactta 322  Q
    ||||||| |||||||| |||| |||||||||||||||  ||||||||||  | |||| | ||||||||  | ||||||||||    
T  46367494 tagagatgaatgagttggataaggatatgatatatgatagaacattatgacgtcgtttgatccatgtagcctaccccactta 46367413  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 224 - 331
Target Start/End: Original strand, 26055580 - 26055686
Alignment:
Q  224 gaaactattaagagatttagagattaatgagtttgatatggatatgatatatgactgaacattatggtggcgttcggtccatgtaatcaaccccacttag 323  Q
    |||| ||||||| ||| |||||||||||||| | |||| || |||||||||||| ||||||||||| ||||||| | ||||||||  | | |||||||||    
T  26055580 gaaattattaag-gatctagagattaatgagatggataggggtatgatatatgattgaacattatgatggcgtttgatccatgtagccgatcccacttag 26055678  T
Q  324 tgagataa 331  Q
    || |||||    
T  26055679 tgggataa 26055686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 293
Target Start/End: Original strand, 10108965 - 10109040
Alignment:
Q  220 aagagaaactattaaga--gatttagagattaatgagtttgatatggatatgatatatgactgaacattatggtgg 293  Q
    ||||||||||| |||||  ||| |||||||||| ||||||||||  |||||| |||||||  ||||||||||||||    
T  10108965 aagagaaactaataagaaagatctagagattaacgagtttgatagagatatgttatatgatagaacattatggtgg 10109040  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 290
Target Start/End: Original strand, 16715449 - 16715497
Alignment:
Q  242 agagattaatgagtttgatatggatatgatatatgactgaacattatgg 290  Q
    ||||||||||| |||||||| |||||||||||||||  |||||||||||    
T  16715449 agagattaatgggtttgatagggatatgatatatgatagaacattatgg 16715497  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 241 - 331
Target Start/End: Complemental strand, 36123289 - 36123199
Alignment:
Q  241 tagagattaatgagtttgatatggatatgatatatgactgaacattatggtggcgttcggtccatgtaatcaaccccacttagtgagataa 331  Q
    ||||||||||||||||   || || ||||||||||||  |||||||||||||||||| | |||||||||||   ||||||||||| |||||    
T  36123289 tagagattaatgagttatgtaggggtatgatatatgatagaacattatggtggcgtttgatccatgtaatcggtcccacttagtgggataa 36123199  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 274
Target Start/End: Original strand, 28005692 - 28005743
Alignment:
Q  225 aaactattaaga--gatttagagattaatgagtttgatatggatatgatata 274  Q
    ||||||||||||  ||| ||||||||||||||||||||| ||||||||||||    
T  28005692 aaactattaagaaagatctagagattaatgagtttgatagggatatgatata 28005743  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 220 - 272
Target Start/End: Complemental strand, 28186905 - 28186851
Alignment:
Q  220 aagagaaactattaaga--gatttagagattaatgagtttgatatggatatgata 272  Q
    |||||||||||||||||  |||||||||||||||||||| ||||  |||||||||    
T  28186905 aagagaaactattaagaaagatttagagattaatgagttggatagagatatgata 28186851  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 330
Target Start/End: Original strand, 27998593 - 27998705
Alignment:
Q  220 aagagaaactattaaga--gatttagagattaatgagtttgatatggatatgatatatgactgaacattatggtggcgttcggtccatgtaatcaacccc 317  Q
    ||||||||||| |||||  ||| || ||||||||||||| |||| | | |||||||||||  ||| ||||||  | |||| | ||||||||| | |||||    
T  27998593 aagagaaactactaagaaagatctacagattaatgagttagataggaacatgatatatgatagaatattatgacgtcgtttgatccatgtaaccgacccc 27998692  T
Q  318 acttagtgagata 330  Q
    |||||||| ||||    
T  27998693 acttagtgggata 27998705  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 222 - 331
Target Start/End: Complemental strand, 21870191 - 21870083
Alignment:
Q  222 gagaaactattaagagatttagagattaatgagtttgatatggatatgatatatgactgaacattatggtggcgttcggtccatgtaatcaaccccactt 321  Q
    |||||||||||||| ||| ||||||||||||||||  ||| ||||||||||||| | |||| |||||||| ||||| | |||||| |  | ||| |||||    
T  21870191 gagaaactattaag-gatctagagattaatgagttatatagggatatgatatatcattgaatattatggttgcgtttgatccatgcagccgacctcactt 21870093  T
Q  322 agtgagataa 331  Q
    |||| |||||    
T  21870092 agtgggataa 21870083  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 219 - 331
Target Start/End: Complemental strand, 30914633 - 30914519
Alignment:
Q  219 gaagagaaactattaaga--gatttagagattaatgagtttgatatggatatgatatatgactgaacattatggtggcgttcggtccatgtaatcaaccc 316  Q
    ||||||||||||| | ||  ||| |||||||||||||||| |||| |||||||||||||||  |||| ||||||  ||||| | ||||| |   ||||||    
T  30914633 gaagagaaactatcatgaaggatctagagattaatgagttggatagggatatgatatatgatagaactttatggcagcgtttgatccatattgccaaccc 30914534  T
Q  317 cacttagtgagataa 331  Q
    ||||||||| |||||    
T  30914533 cacttagtgggataa 30914519  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 220 - 331
Target Start/End: Original strand, 40830354 - 40830466
Alignment:
Q  220 aagagaaactattaaga--gatttagagattaatgagtttgatatggatatgatatatgactgaacattatggtggcgttcggtccatgtaatcaacccc 317  Q
    |||||||||||||||||  ||| |||| |||||||||||  ||||| |||||||||||||  |||||||| || |||||| | ||||||||  |||||||    
T  40830354 aagagaaactattaagaaggatctagaaattaatgagttgtatatg-atatgatatatgatagaacattacggaggcgtttgatccatgtagccaacccc 40830452  T
Q  318 acttagtgagataa 331  Q
     | ||||| |||||    
T  40830453 tcctagtgggataa 40830466  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 241 - 290
Target Start/End: Complemental strand, 19262565 - 19262516
Alignment:
Q  241 tagagattaatgagtttgatatggatatgatatatgactgaacattatgg 290  Q
    |||||||||||||||| |||| |||||||||||||||  |||||||||||    
T  19262565 tagagattaatgagttggatagggatatgatatatgatagaacattatgg 19262516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 219 - 331
Target Start/End: Original strand, 41483638 - 41483752
Alignment:
Q  219 gaagagaaactattaaga--gatttagagattaatgagtttgatatggatatgatatatgactgaacattatggtggcgttcggtccatgtaatcaaccc 316  Q
    ||||||||||||||||||  ||| |||| ||||| ||||| ||||| |||||||||||||   |||| |||||||| | |  | ||||||||  | ||||    
T  41483638 gaagagaaactattaagaaagatctagaaattaacgagttggatatagatatgatatatggtagaactttatggtgtcatatgatccatgtagccgaccc 41483737  T
Q  317 cacttagtgagataa 331  Q
    ||||||||| |||||    
T  41483738 cacttagtgggataa 41483752  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 289
Target Start/End: Original strand, 43832250 - 43832321
Alignment:
Q  220 aagagaaactattaaga--gatttagagattaatgagtttgatatggatatgatatatgactgaacattatg 289  Q
    |||||||||||||||||  ||| |||||||||||||||| |||| ||||||||| ||| |  ||||||||||    
T  43832250 aagagaaactattaagaaggatctagagattaatgagttggataaggatatgatgtattatagaacattatg 43832321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 219 - 331
Target Start/End: Complemental strand, 8197672 - 8197558
Alignment:
Q  219 gaagagaaactattaaga--gatttagagattaatgagtttgatatggatatgatatatgactgaacattatggtggcgttcggtccatgtaatcaaccc 316  Q
    ||||||||||||||||||  ||| || ||||||||||||| ||||   |||||||||||||  ||| ||||||| | |||| | ||||||||  | ||||    
T  8197672 gaagagaaactattaagaaagatctaaagattaatgagttggatagaaatatgatatatgatagaatattatggcgtcgtttgatccatgtagccgaccc 8197573  T
Q  317 cacttagtgagataa 331  Q
     |||||||| |||||    
T  8197572 tacttagtgggataa 8197558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 219 - 331
Target Start/End: Complemental strand, 8202432 - 8202318
Alignment:
Q  219 gaagagaaactattaaga--gatttagagattaatgagtttgatatggatatgatatatgactgaacattatggtggcgttcggtccatgtaatcaaccc 316  Q
    ||||||||||||||||||  ||| || ||||||||||||| ||||   |||||||||||||  ||| ||||||| | |||| | ||||||||  | ||||    
T  8202432 gaagagaaactattaagaaagatctaaagattaatgagttggatagaaatatgatatatgatagaatattatggcgtcgtttgatccatgtagccgaccc 8202333  T
Q  317 cacttagtgagataa 331  Q
     |||||||| |||||    
T  8202332 tacttagtgggataa 8202318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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