View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10566_high_1 (Length: 402)
Name: NF10566_high_1
Description: NF10566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10566_high_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 144; Significance: 1e-75; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 41 - 362
Target Start/End: Original strand, 55861129 - 55861452
Alignment:
| Q |
41 |
ccaccagcaacaaaataaaactgcaatcaacaaatgaagacaaaacccatataaaatgaaaggtaaaaccaaccccaccacagagaaattatggacccga |
140 |
Q |
| |
|
|||||| |||||||| |||||||||||||||||| |||||||||||||||| ||||||||||| ||| |||||||||||| ||||||||||||||||| |
|
|
| T |
55861129 |
ccaccaacaacaaaacaaaactgcaatcaacaaaagaagacaaaacccatacaaaatgaaaggcaaatataaccccaccacaaagaaattatggacccga |
55861228 |
T |
|
| Q |
141 |
attgaagtaccgccggaaa-ttgttcaagtaacggccccattatttgacaaatccaactacaatctctgcaaaatccgtattaacatcgcgaacgcgcga |
239 |
Q |
| |
|
||||||| || | ||||| || |||||||| |||||||||||| ||||||||||||||| |||||||||| ||||||||| ||| ||| |||||||||| |
|
|
| T |
55861229 |
attgaaggacaactggaaaattcttcaagtaccggccccattatctgacaaatccaactaaaatctctgcacaatccgtatgaacgtcgggaacgcgcga |
55861328 |
T |
|
| Q |
240 |
gaaatccatacaaagaagtcttcttggagcagctttcgaaaaataatagaaaaaccgacataaatccccaaattaaaac-aaccatggaagagttggatc |
338 |
Q |
| |
|
||| |||||||||||||||||||| ||||||||| ||| |||| | | |||| |||||||||||||||| | ||| |||| | |||||||||| |
|
|
| T |
55861329 |
aaaagtcatacaaagaagtcttcttgaagcagcttttgaattataacacagaaactgacataaatccccaaagaagaacgggccatcaaggagttggatc |
55861428 |
T |
|
| Q |
339 |
tagcgcaaataacccctcctacag |
362 |
Q |
| |
|
||||||||| |||||||||||||| |
|
|
| T |
55861429 |
tagcgcaaacaacccctcctacag |
55861452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 133; Significance: 5e-69; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 42 - 383
Target Start/End: Complemental strand, 16700203 - 16699860
Alignment:
| Q |
42 |
caccagcaacaaaataaaactgcaatcaacaaatgaagacaaaacccatataaaatgaaaggtaaaaccaaccccaccacagagaaattatggacccgaa |
141 |
Q |
| |
|
||||| |||||||| ||||||||||||| |||| || |||||||||| ||||||||||||| || |||||||||||| ||||||||||| | |||||| |
|
|
| T |
16700203 |
caccaacaacaaaacaaaactgcaatcagcaaaagatgacaaaaccctaataaaatgaaaggctaatccaaccccaccatagagaaattattgtcccgaa |
16700104 |
T |
|
| Q |
142 |
ttgaagtaccgccggaaattgttcaagtaacggccccattatttgacaaatccaactacaatctctg--caaaatccgtattaacatcgcgaacgcgcga |
239 |
Q |
| |
|
| ||||||||| |||||||| |||||||| ||| ||||||| |||||||||||||||||||| || || |||| |||||||||||| |||||||||| |
|
|
| T |
16700103 |
tcgaagtaccgtcggaaatttttcaagtatcggtcccattacctgacaaatccaactacaatccatgcacacaatctgtattaacatcgggaacgcgcga |
16700004 |
T |
|
| Q |
240 |
gaaatccatacaaagaagtcttcttggagcagctttcgaaaaataatagaaaaaccgacataaatccccaaattaaaacaaccatggaagagttggatct |
339 |
Q |
| |
|
||| |||| || ||||||||||| | |||||| ||| |||||| | || ||||||||||| || |||| ||| || |||||| ||||||||||| |
|
|
| T |
16700003 |
aaaagccatccagcaaagtcttcttgaggtagcttttgaattataatacacaatccgacataaattcctaaatcaaaccacccatggtggagttggatct |
16699904 |
T |
|
| Q |
340 |
agcgcaaataacccctcctacaggacgatgtctctagaacagta |
383 |
Q |
| |
|
||||||||| |||||||||||| |||||||||||| |||||||| |
|
|
| T |
16699903 |
agcgcaaatcacccctcctacatgacgatgtctctggaacagta |
16699860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 125; Significance: 3e-64; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 16 - 160
Target Start/End: Complemental strand, 3821032 - 3820888
Alignment:
| Q |
16 |
agaacaatatcacgacaatcaggcaccaccagcaacaaaataaaactgcaatcaacaaatgaagacaaaacccatataaaatgaaaggtaaaaccaaccc |
115 |
Q |
| |
|
||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
3821032 |
agaacaatatcaccacaatcagacaccaccagcaacaaaataaaactgcaatcaacaaaagaagacaaaatccatataaaatgaaaggtaaaaccaaccc |
3820933 |
T |
|
| Q |
116 |
caccacagagaaattatggacccgaattgaagtaccgccggaaat |
160 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
3820932 |
caccacagagaaattatggacccgaattgaagtaccgcccgaaat |
3820888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 123; Significance: 4e-63; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 41 - 382
Target Start/End: Complemental strand, 29273427 - 29273106
Alignment:
| Q |
41 |
ccaccagcaacaaaataaaactgcaatcaacaaatgaagacaaaacccatataaaatgaaaggtaaaaccaaccccaccacagagaaattatggacccga |
140 |
Q |
| |
|
|||||| |||||||| ||||||||||||||||| |||||||||||||||| ||||||||||| ||| | |||||||||||| ||||||||||||||||| |
|
|
| T |
29273427 |
ccaccaacaacaaaacgaaactgcaatcaacaaaagaagacaaaacccatacaaaatgaaaggcaaatctaaccccaccacaaagaaattatggacccga |
29273328 |
T |
|
| Q |
141 |
attgaagtaccgccggaaattgttcaagtaacggccccattatttgacaaatccaactacaatctctgcaaaatccgtattaacatcgcgaacgcgcgag |
240 |
Q |
| |
|
||| |||||| |||||||||||| ||||||||||||||| |||||||||| ||||||||| ||| ||| |||||||||| |
|
|
| T |
29273327 |
att---------------------caagtaccggccccattatctgacaaatccaactaaaatctctgcacaatccgtatgaacgtcgggaacgcgcgaa |
29273249 |
T |
|
| Q |
241 |
aaatccatacaaagaagtcttcttggagcagctttcgaaaaataatagaaaaaccgacataaatccccaaattaaaac-aaccatggaagagttggatct |
339 |
Q |
| |
|
||| ||||||||||||||||||||| ||||||||| ||| |||| | | |||| |||||||||||||||| | ||| |||| | ||||||||||| |
|
|
| T |
29273248 |
aaagccatacaaagaagtcttcttgaagcagcttttgaattataacacagaaactgacataaatccccaaagaagaacgggccatcaaggagttggatct |
29273149 |
T |
|
| Q |
340 |
agcgcaaataacccctcctacaggacgatgtctctagaacagt |
382 |
Q |
| |
|
|||||||| |||||||||||||||| ||||||||||||||||| |
|
|
| T |
29273148 |
agcgcaaacaacccctcctacaggaagatgtctctagaacagt |
29273106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University