View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10566_low_3 (Length: 379)
Name: NF10566_low_3
Description: NF10566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10566_low_3 |
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| [»] chr2 (1 HSPs) |
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| [»] scaffold0176 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 7 - 379
Target Start/End: Original strand, 38724924 - 38725300
Alignment:
| Q |
7 |
atgtccttgcttgcatttgcaagtgaagttcgttggggcgaaatcttcattggctctgcgaaggaattctcatccattataccggaggatgtaagcactg |
106 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
38724924 |
atgtccttgcttgcatttgcaagtgaagttcgttggggcgaaatcttcattggctctgcgaaggaattctcatccattataccggaggatgtaagtactg |
38725023 |
T |
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| Q |
107 |
ccattgatgaaccagatggttgcacatttgtacttaacccatttattgaaattcctaagttctgagaggcttttgcatagtttactacctttactcttag |
206 |
Q |
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| T |
38725024 |
ccattgatgaaccagatggttgcacatttgtacttaacccatttattgaaattcctaagttctgagaggcttttgcatagtttactacctttagtcttag |
38725123 |
T |
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| Q |
207 |
ataatttttcccatcttgagaatttttatactgaattgcggatgcaacaactgaataaggagaattttggagagttgaattaagcaagagtgctccacta |
306 |
Q |
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| T |
38725124 |
ataatttttcccatcttgagaatttttatactgaattgcggatgcaacaactgaataaggagaattttggagagttgaattaagcaagagtgctccacta |
38725223 |
T |
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| Q |
307 |
gattcaacaaagagggtttgcatcc----aataacttggagttccataattctgataagagttaaaaacaattgcgt |
379 |
Q |
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| T |
38725224 |
gattcaacaaagaaggtttgcatccaattaataacttggagttccataattctgataagagttaaaaacaattgcgt |
38725300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0176 (Bit Score: 119; Significance: 1e-60; HSPs: 2)
Name: scaffold0176
Description:
Target: scaffold0176; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 192 - 377
Target Start/End: Complemental strand, 32162 - 31977
Alignment:
| Q |
192 |
tacctttactcttagataatttttcccatcttgagaatttttatactgaattgcggatgcaacaactgaataaggagaattttggagagttgaattaagc |
291 |
Q |
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| T |
32162 |
tacctttactcttagataattcttcccatcttgagaatttttatactcaattgcggatgcaacaattgagctagaagaattttgaagagttgaattaagc |
32063 |
T |
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| Q |
292 |
aagagtgctccactagattcaacaaagagggtttgcatccaataacttggagttccataattctgataagagttaaaaacaattgc |
377 |
Q |
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| T |
32062 |
aatgttgctccactagattcaataaagagntgttgtagccaataacttggagttccataattctgataagagttaaaaacaattgc |
31977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0176; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 56 - 158
Target Start/End: Complemental strand, 32435 - 32333
Alignment:
| Q |
56 |
ttggctctgcgaaggaattctcatccattataccggaggatgtaagcactgccattgatgaaccagatggttgcacatttgtacttaacccatttattga |
155 |
Q |
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| T |
32435 |
ttggctccgagaaggaattctcatccattctattggaggacgtaagcaccaccattgatgaattagacgattgaacaattgaatttaaaccatttattga |
32336 |
T |
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| Q |
156 |
aat |
158 |
Q |
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||| |
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| T |
32335 |
aat |
32333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 118; Significance: 4e-60; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 192 - 377
Target Start/End: Complemental strand, 34165341 - 34165156
Alignment:
| Q |
192 |
tacctttactcttagataatttttcccatcttgagaatttttatactgaattgcggatgcaacaactgaataaggagaattttggagagttgaattaagc |
291 |
Q |
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| T |
34165341 |
tacctttactcttagataattcttcccatcttgagaatttttatactcaattgcggatgcaacaattgagctagaagaattttgaagagttgaattaagc |
34165242 |
T |
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| Q |
292 |
aagagtgctccactagattcaacaaagagggtttgcatccaataacttggagttccataattctgataagagttaaaaacaattgc |
377 |
Q |
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| T |
34165241 |
aatgttgctccactagattcaataaagagttgttgtagccaataacttggagttccataattctgataagagttaaaaacaattgc |
34165156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 192 - 377
Target Start/End: Complemental strand, 34171838 - 34171653
Alignment:
| Q |
192 |
tacctttactcttagataatttttcccatcttgagaatttttatactgaattgcggatgcaacaactgaataaggagaattttggagagttgaattaagc |
291 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| ||| || ||||||||| ||||||||||||||| |
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| T |
34171838 |
tacctttactcttagataattcttcccatcttgagaatttttatactcaattgcggatgcaacaattgagctagaagaattttgaagagttgaattaagc |
34171739 |
T |
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| Q |
292 |
aagagtgctccactagattcaacaaagagggtttgcatccaataacttggagttccataattctgataagagttaaaaacaattgc |
377 |
Q |
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| T |
34171738 |
aatgttgctccactagattcaataaagagttgttgtagccaataacttggagttccataattctgataagagttaaaaacaattgc |
34171653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 192 - 376
Target Start/End: Complemental strand, 34215435 - 34215251
Alignment:
| Q |
192 |
tacctttactcttagataatttttcccatcttgagaatttttatactgaattgcggatgcaacaactgaataaggagaattttggagagttgaattaagc |
291 |
Q |
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| T |
34215435 |
tacctttactcttagataattcttcccatcttgagaatttttatactcaattgcggatgcaacaattgagctagaagaattttgaagagttgaattaagc |
34215336 |
T |
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| Q |
292 |
aagagtgctccactagattcaacaaagagggtttgcatccaataacttggagttccataattctgataagagttaaaaacaattg |
376 |
Q |
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| T |
34215335 |
aatgttgctccactagattcaataaagagttgttgtagccaataacttggagttccataattctgataagagttaaaaacaattg |
34215251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 56 - 158
Target Start/End: Complemental strand, 34165614 - 34165512
Alignment:
| Q |
56 |
ttggctctgcgaaggaattctcatccattataccggaggatgtaagcactgccattgatgaaccagatggttgcacatttgtacttaacccatttattga |
155 |
Q |
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| T |
34165614 |
ttggctccgagaaggaattctcatccattctattggaggacgtaagcaccaccattgatgaattagacgattgaacaattgaatttaaaccatttattga |
34165515 |
T |
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| Q |
156 |
aat |
158 |
Q |
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||| |
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| T |
34165514 |
aat |
34165512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 56 - 158
Target Start/End: Complemental strand, 34172111 - 34172009
Alignment:
| Q |
56 |
ttggctctgcgaaggaattctcatccattataccggaggatgtaagcactgccattgatgaaccagatggttgcacatttgtacttaacccatttattga |
155 |
Q |
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| T |
34172111 |
ttggctccgagaaggaattctcatccattctattggaggacgtaagtaccaccattgatgaattagacgattgaacaattgaatttaaaccatttattga |
34172012 |
T |
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| Q |
156 |
aat |
158 |
Q |
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||| |
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| T |
34172011 |
aat |
34172009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 66 - 158
Target Start/End: Complemental strand, 34215698 - 34215606
Alignment:
| Q |
66 |
gaaggaattctcatccattataccggaggatgtaagcactgccattgatgaaccagatggttgcacatttgtacttaacccatttattgaaat |
158 |
Q |
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||||||||||||||||||| || |||||| |||||||| ||||||||||| ||| | ||| ||| ||| | |||| ||||||||| |||| |
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| T |
34215698 |
gaaggaattctcatccattctattggaggacgtaagcaccaccattgatgaattagacgattgaacagttgaatttaaaccatttattaaaat |
34215606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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