View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10566_low_5 (Length: 321)
Name: NF10566_low_5
Description: NF10566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10566_low_5 |
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| [»] scaffold0015 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 12 - 305
Target Start/End: Original strand, 58996 - 59289
Alignment:
| Q |
12 |
agaaaagaacaaacctgttggaaggtgcttagggatgccaagatagaaccaccaatccagacactgtactttctctcaggcggtgctaccaccttgatct |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
58996 |
agaaaagaacaaacctgttggaaggtgcttagggatgccaagatagaaccaccaatccagacactgtactttctctcaggcggtgctaccaccttgatct |
59095 |
T |
|
| Q |
112 |
tcatgctacttggtgctaatgcagaaatctccttgctcattctatcagcaatgccaggaaacatggttgtacctcctgataggacaatgttaccatacag |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
59096 |
tcatgctacttggtgctaatgcagaaatctccttgctcattctatcagcaatgccaggaaacatggttgtacctcctgataggacaatgttaccatacag |
59195 |
T |
|
| Q |
212 |
gtctttcctgatgtcaacatcacatttcattatggagttgtaagtggtctcatgaattcctgcagcttccattcccaccatggatggttggtat |
305 |
Q |
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| T |
59196 |
gtctttcctgatgtcaacatcacatttcattatggagttgtaagtggtctcatgaattcctgcagcttccattcccaccatggatggttggtat |
59289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 156; Significance: 7e-83; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 19 - 302
Target Start/End: Complemental strand, 8690190 - 8689907
Alignment:
| Q |
19 |
aacaaacctgttggaaggtgcttagggatgccaagatagaaccaccaatccagacactgtactttctctcaggcggtgctaccaccttgatcttcatgct |
118 |
Q |
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|||||||||| ||||||||||| || ||||||||||| ||||| || |||||||||||||| ||||||||||| ||||| |||||||||||||||||||| |
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| T |
8690190 |
aacaaacctgctggaaggtgctaagagatgccaagatggaacctccgatccagacactgtattttctctcaggtggtgcaaccaccttgatcttcatgct |
8690091 |
T |
|
| Q |
119 |
acttggtgctaatgcagaaatctccttgctcattctatcagcaatgccaggaaacatggttgtacctcctgataggacaatgttaccatacaggtctttc |
218 |
Q |
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| T |
8690090 |
acttggggccaaagcagaaatttccttgctcattctatcagcaatgcctgggaacatggtagttcctcctgaaagcacaatgttaccgtacaagtctttc |
8689991 |
T |
|
| Q |
219 |
ctgatgtcaacatcacatttcattatggagttgtaagtggtctcatgaattcctgcagcttccattcccaccatggatggttgg |
302 |
Q |
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||||| |||||||| || ||||| ||||||||||| |||||||| ||||| ||||| ||||||||||| | ||| ||||||||| |
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| T |
8689990 |
ctgatatcaacatcgcacttcatgatggagttgtatgtggtctcgtgaatgcctgctgcttccattcctatcatagatggttgg |
8689907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 24 - 250
Target Start/End: Original strand, 37050189 - 37050415
Alignment:
| Q |
24 |
acctgttggaaggtgcttagggatgccaagatagaaccaccaatccagacactgtactttctctcaggcggtgctaccaccttgatcttcatgctacttg |
123 |
Q |
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||||||||||| ||||| || |||||||| || ||||| |||||||||||||||||||| ||||| || |||||||| |||||||| ||||||||||| | |
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| T |
37050189 |
acctgttggaaagtgctgagagatgccaaaatggaacctccaatccagacactgtacttcctctctggtggtgctacaaccttgattttcatgctactag |
37050288 |
T |
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| Q |
124 |
gtgctaatgcagaaatctccttgctcattctatcagcaatgccaggaaacatggttgtacctcctgataggacaatgttaccatacaggtctttcctgat |
223 |
Q |
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| T |
37050289 |
gagccaatgctgtaatctccttgctcattctatcagcaataccagggaacattgttgaaccaccactcaacacgatgttaccatagagatccttcctaat |
37050388 |
T |
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| Q |
224 |
gtcaacatcacatttcattatggagtt |
250 |
Q |
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| T |
37050389 |
gtcaacatcacacttcatgatcgagtt |
37050415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 104; Significance: 8e-52; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 24 - 295
Target Start/End: Complemental strand, 41388764 - 41388493
Alignment:
| Q |
24 |
acctgttggaaggtgcttagggatgccaagatagaaccaccaatccagacactgtactttctctcaggcggtgctaccaccttgatcttcatgctacttg |
123 |
Q |
| |
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|||||||| || ||||| || || || |||||||| |||||||||||||||||||| |||||||| || || || |||||||||||||||||||| |||| |
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| T |
41388764 |
acctgttgaaaagtgctaagagaagctaagatagagccaccaatccagacactgtattttctctcgggtggagcaaccaccttgatcttcatgctgcttg |
41388665 |
T |
|
| Q |
124 |
gtgctaatgcagaaatctccttgctcattctatcagcaatgccaggaaacatggttgtacctcctgataggacaatgttaccatacaggtctttcctgat |
223 |
Q |
| |
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| T |
41388664 |
gggccaacgcggtaatttccttgctcattctgtcagcaataccagggaacatagtagtaccaccactaaggacaatgtttccatacaggtcctttctgat |
41388565 |
T |
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| Q |
224 |
gtcaacatcacatttcattatggagttgtaagtggtctcatgaattcctgcagcttccattcccaccatgga |
295 |
Q |
| |
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| T |
41388564 |
atcaacatcacacttcatgattgagttgtatgtcgtctcgtgaattccaacagcttccattccaaccatgga |
41388493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 24 - 283
Target Start/End: Original strand, 1261854 - 1262113
Alignment:
| Q |
24 |
acctgttggaaggtgcttagggatgccaagatagaaccaccaatccagacactgtactttctctcaggcggtgctaccaccttgatcttcatgctacttg |
123 |
Q |
| |
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|||||||| ||||| || || |||||||||||||| ||||||||||||||||||||||| |||||||| ||||| ||||||||||| ||||||||||||| |
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| T |
1261854 |
acctgttgaaaggtactgagtgatgccaagatagacccaccaatccagacactgtacttcctctcaggaggtgcaaccaccttgattttcatgctacttg |
1261953 |
T |
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| Q |
124 |
gtgctaatgcagaaatctccttgctcattctatcagcaatgccaggaaacatggttgtacctcctgataggacaatgttaccatacaggtctttcctgat |
223 |
Q |
| |
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| || | ||| || ||||||||||| | |||||||| |||||||||||||| | |||||| || ||||| || ||||| || || ||||| || |
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| T |
1261954 |
gagcaagagcactgatttccttgctcatacggtcagcaattccaggaaacatggtagaacctccactaagcacaatatttccatatagatccttcctaat |
1262053 |
T |
|
| Q |
224 |
gtcaacatcacatttcattatggagttgtaagtggtctcatgaattcctgcagcttccat |
283 |
Q |
| |
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||||||||||| ||||| ||||||||||| || || ||||| ||||| | ||||||||| |
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|
| T |
1262054 |
atcaacatcacacttcatgatggagttgtatgtagtttcatggattccagtagcttccat |
1262113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 24 - 184
Target Start/End: Complemental strand, 68800 - 68640
Alignment:
| Q |
24 |
acctgttggaaggtgcttagggatgccaagatagaaccaccaatccagacactgtactttctctcaggcggtgctaccaccttgatcttcatgctacttg |
123 |
Q |
| |
|
||||||||||||||||| ||||| ||||| || || || |||||||||||||| ||||| ||||| || ||||| |||||||| || ||||||||||||| |
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| T |
68800 |
acctgttggaaggtgctgagggaagccaaaatggagcctccaatccagacactatacttcctctctggtggtgcaaccaccttaattttcatgctacttg |
68701 |
T |
|
| Q |
124 |
gtgctaatgcagaaatctccttgctcattctatcagcaatgccaggaaacatggttgtacc |
184 |
Q |
| |
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|||| ||||| | |||||||||||||| |||||||||||||| || ||||| || ||||| |
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| T |
68700 |
gtgccaatgctgtgatctccttgctcatcctatcagcaatgccggggaacatagtcgtacc |
68640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 63 - 302
Target Start/End: Original strand, 43646914 - 43647153
Alignment:
| Q |
63 |
ccaatccagacactgtactttctctcaggcggtgctaccaccttgatcttcatgctacttggtgctaatgcagaaatctccttgctcattctatcagcaa |
162 |
Q |
| |
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|||||||||||||||||||||||||| || || || || ||||| ||||||||||| || || || | |||| |||||||||||||| | ||||||| |
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| T |
43646914 |
ccaatccagacactgtactttctctctggtggagccacaaccttaatcttcatgctgctaggagccagggcagtgatctccttgctcatacggtcagcaa |
43647013 |
T |
|
| Q |
163 |
tgccaggaaacatggttgtacctcctgataggacaatgttaccatacaggtctttcctgatgtcaacatcacatttcattatggagttgtaagtggtctc |
262 |
Q |
| |
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| ||||| ||||| |||| ||| || || |||||||| || ||||| || || ||||| || |||||||| ||||| || |||||||| |||||||| |
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| T |
43647014 |
taccagggaacatagttgaaccaccactaagaacaatgttgccgtacagatcctttctgatatccacatcacacttcatgatagagttgtaggtggtctc |
43647113 |
T |
|
| Q |
263 |
atgaattcctgcagcttccattcccaccatggatggttgg |
302 |
Q |
| |
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|||||||| |||||||||||||| | ||| ||||||||| |
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|
| T |
43647114 |
gtgaattccagcagcttccattccgatcattgatggttgg |
43647153 |
T |
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