View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10566_low_6 (Length: 308)
Name: NF10566_low_6
Description: NF10566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10566_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 137; Significance: 1e-71; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 13 - 149
Target Start/End: Complemental strand, 24777043 - 24776907
Alignment:
| Q |
13 |
gaacaaaggtgttaatgccacaatctgtagaatattaaactgaggtacttggtaatgtaataatgtacacaattatactcaatcttcatttcttatctct |
112 |
Q |
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| T |
24777043 |
gaacaaaggtgttaatgccacaatctgtagaatattaaactgaggtacttggtaatgtaataatgtacacaattatactcaatcttcatttcttatctct |
24776944 |
T |
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| Q |
113 |
caaaagacccgtaaattcaggcaagcaacatataaga |
149 |
Q |
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| T |
24776943 |
caaaagacccgtaaattcaggcaagcaacatataaga |
24776907 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 214 - 294
Target Start/End: Complemental strand, 24776842 - 24776762
Alignment:
| Q |
214 |
agcaaaattattataacaacgccaacacaagatgtgaacggtgtgaataaggaaacagtacaaaagccggcaaggaacctg |
294 |
Q |
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| T |
24776842 |
agcaaaattattataacaacgccaacacaagatgtgaacggtgtgaataaggaaacagtacaaaagccggcaaggaacctg |
24776762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 269
Target Start/End: Complemental strand, 17349659 - 17349626
Alignment:
| Q |
236 |
caacacaagatgtgaacggtgtgaataaggaaac |
269 |
Q |
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| T |
17349659 |
caacaccagatgtgaacggtgtgaataaggaaac |
17349626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 13 - 91
Target Start/End: Complemental strand, 48922066 - 48921988
Alignment:
| Q |
13 |
gaacaaaggtgttaatgccacaatctgtagaatattaaactgaggtacttggtaatgtaataatgtacacaattatact |
91 |
Q |
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| T |
48922066 |
gaacaaaggccttgatgccacaatctaaagaatattaaactaaggcgcttggtgatgcaataatgtacacaattatact |
48921988 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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