View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10566_low_7 (Length: 289)
Name: NF10566_low_7
Description: NF10566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10566_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 14 - 275
Target Start/End: Complemental strand, 41863655 - 41863392
Alignment:
| Q |
14 |
agacttctagagcttaactgaaaaaagcttgaaagttgcgtagagtagcaacaaagaaaatagactattgta---tagttttcttcatcaacatgaaaaa |
110 |
Q |
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| T |
41863655 |
agacttctagagcttaactgaaaaaagcttgaaagttgcgtagagtagcaactaagaaaatcgacaattgtacaatagttttcttgatcaacatgaaaaa |
41863556 |
T |
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| Q |
111 |
cgacagagcctaagctaggattcatcggttacatgcaattttcacgatgatgcaatttatggcgtgcatacacccgaattcctaaaacacaattgttgct |
210 |
Q |
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| T |
41863555 |
cgacagagcctaagctaggattcatcggttacacgcaattttcacgatgatgcaatttatggcatgcatacacccgaattcct-aaacacaattgttgct |
41863457 |
T |
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| Q |
211 |
tcaggacttccaaatcataaattaagactaaaagttggaataccggtcatgttgttgaggaattt |
275 |
Q |
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| T |
41863456 |
tcaggacttccaaatcacaaattaagactaaaagttggagtaccggtcatgctgttgaggaattt |
41863392 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 195 - 275
Target Start/End: Complemental strand, 49200661 - 49200579
Alignment:
| Q |
195 |
aaacacaattgttgcttcaggacttccaaa--tcataaattaagactaaaagttggaataccggtcatgttgttgaggaattt |
275 |
Q |
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| T |
49200661 |
aaacacaattgttgcttcaagagttccaaaaatcacaaattaagactaaaggttggagtgtcggtcatgttgttgagaaattt |
49200579 |
T |
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