View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10567_high_2 (Length: 344)

Name: NF10567_high_2
Description: NF10567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10567_high_2
NF10567_high_2
[»] chr5 (6 HSPs)
chr5 (19-329)||(29712859-29713169)
chr5 (210-325)||(29695721-29695836)
chr5 (255-324)||(42562726-42562795)
chr5 (230-325)||(29687640-29687735)
chr5 (259-321)||(1812043-1812105)
chr5 (260-321)||(178638-178699)
[»] chr4 (29 HSPs)
chr4 (242-321)||(48156825-48156904)
chr4 (245-323)||(45366617-45366695)
chr4 (243-324)||(48148080-48148161)
chr4 (259-324)||(48862859-48862924)
chr4 (259-321)||(48735713-48735775)
chr4 (266-322)||(7904657-7904713)
chr4 (265-325)||(49048993-49049053)
chr4 (263-322)||(7774226-7774285)
chr4 (266-325)||(49044623-49044682)
chr4 (260-322)||(33134223-33134285)
chr4 (265-322)||(7877344-7877401)
chr4 (261-321)||(48870162-48870222)
chr4 (261-321)||(48885848-48885908)
chr4 (263-322)||(7771026-7771085)
chr4 (263-322)||(7813102-7813161)
chr4 (263-322)||(7822591-7822650)
chr4 (242-322)||(45372454-45372534)
chr4 (266-322)||(49041535-49041591)
chr4 (259-322)||(7765239-7765302)
chr4 (263-322)||(7800259-7800318)
chr4 (263-322)||(7907947-7908006)
chr4 (267-322)||(33133663-33133718)
chr4 (263-321)||(7789711-7789769)
chr4 (259-321)||(48891027-48891089)
chr4 (259-324)||(48170984-48171049)
chr4 (266-322)||(7238117-7238173)
chr4 (261-324)||(48898342-48898405)
chr4 (263-318)||(48902572-48902627)
chr4 (269-321)||(48875474-48875526)
[»] chr1 (5 HSPs)
chr1 (260-322)||(24309796-24309858)
chr1 (246-321)||(24322067-24322142)
chr1 (259-322)||(24340032-24340095)
chr1 (260-318)||(24415456-24415514)
chr1 (273-321)||(24366787-24366835)
[»] chr8 (5 HSPs)
chr8 (259-322)||(15348480-15348543)
chr8 (236-322)||(12199902-12199988)
chr8 (236-322)||(12444330-12444416)
chr8 (236-322)||(12194896-12194982)
chr8 (236-322)||(12439324-12439410)
[»] chr6 (1 HSPs)
chr6 (259-325)||(21015394-21015460)
[»] scaffold0508 (1 HSPs)
scaffold0508 (259-322)||(11880-11943)
[»] chr3 (4 HSPs)
chr3 (259-322)||(11024934-11024997)
chr3 (263-322)||(11006359-11006418)
chr3 (259-322)||(11015922-11015985)
chr3 (263-322)||(47452304-47452363)


Alignment Details
Target: chr5 (Bit Score: 303; Significance: 1e-170; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 19 - 329
Target Start/End: Complemental strand, 29713169 - 29712859
Alignment:
Q  19 gatagactctttcaaaggagacataactttcaaaacgaattcatgagcggaagtaggaataaaatataaatggcaaatgcgtctttatcatcctaccaac 118  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29713169 gatagactctttcaaaggagacataactttcaaaaccaattcatgagcggaagtaggaataaaatataaatggcaaatgcgtctttatcatcctaccaac 29713070  T
Q  119 atagtaaagggttgaaaacctaacttaaaaatcaaagtgatccgaaacaatattggcaaaggaggaaacgtgtgaatggagacgatgaagaagacagagc 218  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29713069 atagtaaagggttgaaaacctaacctaaaaatcaaagtgatccgaaacaatattggcaaaggaggaaacgtgtgaatggagacgatgaagaagacagagc 29712970  T
Q  219 aatatctatctattgagttaatcattcaaatccttttaatgttaccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttat 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29712969 aatatctatctattgagttaatcattcaaatccttttaatgttaccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttat 29712870  T
Q  319 ctctcaatctg 329  Q
    |||||||||||    
T  29712869 ctctcaatctg 29712859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 210 - 325
Target Start/End: Original strand, 29695721 - 29695836
Alignment:
Q  210 agacagagcaatatctatctattgagttaatcattcaaatccttttaatgttaccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggtt 309  Q
    ||||||||  ||||||  || |||||||||||||||||||||| |||| |||||| || |||||||||||||||||||| ||||||||||||||||||||    
T  29695721 agacagagacatatcttccttttgagttaatcattcaaatcctattaaggttaccagtcaagtctcttattcgtttcaaatgcgtttgtaagttatggtt 29695820  T
Q  310 ttctcttatctctcaa 325  Q
     |||||||| ||||||    
T  29695821 atctcttatatctcaa 29695836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 255 - 324
Target Start/End: Complemental strand, 42562795 - 42562726
Alignment:
Q  255 taatgttaccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctctca 324  Q
    |||||||||||||||| ||||||||||||||||| |||||||||||||  ||||||||||| ||||||||    
T  42562795 taatgttaccggtgaattctcttattcgtttcaaatgcgtttgtaagtcttggttttctctaatctctca 42562726  T

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Target: chr5; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 230 - 325
Target Start/End: Original strand, 29687640 - 29687735
Alignment:
Q  230 attgagttaatcattcaaatccttttaatgttaccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctctcaa 325  Q
    ||||| || ||||||||||||||| ||| |||||| |||||||||||||| || |||||||| ||||||||||  ||||||||||| || ||||||    
T  29687640 attgaattgatcattcaaatccttctaaagttaccagtgaagtctcttatacgcttcaagtgtgtttgtaagtcttggttttctctcatatctcaa 29687735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 259 - 321
Target Start/End: Original strand, 1812043 - 1812105
Alignment:
Q  259 gttaccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctc 321  Q
    |||||| ||||||| ||| || |||| ||| || |||||||||||||||||||||||||||||    
T  1812043 gttaccagtgaagtatctcatacgttccaaatgggtttgtaagttatggttttctcttatctc 1812105  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 321
Target Start/End: Original strand, 178638 - 178699
Alignment:
Q  260 ttaccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctc 321  Q
    ||||| || |||||||||||||||||||| || ||||||||||  ||||| ||||| |||||    
T  178638 ttaccagttaagtctcttattcgtttcaaatgtgtttgtaagtcttggttatctctcatctc 178699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 4e-23; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 242 - 321
Target Start/End: Complemental strand, 48156904 - 48156825
Alignment:
Q  242 attcaaatccttttaatgttaccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctc 321  Q
    |||||||||||||||  ||||||||||||||||||| | ||||||||||||||||||||||  |||||||||||||||||    
T  48156904 attcaaatccttttatggttaccggtgaagtctcttctacgtttcaagtgcgtttgtaagtcttggttttctcttatctc 48156825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 245 - 323
Target Start/End: Complemental strand, 45366695 - 45366617
Alignment:
Q  245 caaatccttttaatgttaccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctctc 323  Q
    ||||||||  ||| |||||| |||||||||||||| ||||||||||||||||||||||  |||||||||||||||||||    
T  45366695 caaatcctactaaggttaccagtgaagtctcttatacgtttcaagtgcgtttgtaagtattggttttctcttatctctc 45366617  T

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Target: chr4; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 243 - 324
Target Start/End: Complemental strand, 48148161 - 48148080
Alignment:
Q  243 ttcaaatccttttaatgttaccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctctca 324  Q
    |||||||||||| || |||||| ||||||||||||||||||||||| || || |||||||  ||||||||||||||||||||    
T  48148161 ttcaaatcctttcaaggttaccagtgaagtctcttattcgtttcaaatgtgtctgtaagtcttggttttctcttatctctca 48148080  T

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Target: chr4; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 259 - 324
Target Start/End: Original strand, 48862859 - 48862924
Alignment:
Q  259 gttaccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctctca 324  Q
    |||||||||||||||||||||||||||||| |||||||| ||||  ||||||||||||||||||||    
T  48862859 gttaccggtgaagtctcttattcgtttcaaatgcgtttgcaagtcttggttttctcttatctctca 48862924  T

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Target: chr4; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 259 - 321
Target Start/End: Complemental strand, 48735775 - 48735713
Alignment:
Q  259 gttaccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctc 321  Q
    |||||||||||||||||||||||||||||| || ||||||||||  |||||||||||||||||    
T  48735775 gttaccggtgaagtctcttattcgtttcaaatgtgtttgtaagtcttggttttctcttatctc 48735713  T

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Target: chr4; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 266 - 322
Target Start/End: Original strand, 7904657 - 7904713
Alignment:
Q  266 gtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctct 322  Q
    |||||||||||||| |||||||| || ||||||||||||||||||||||||||||||    
T  7904657 gtgaagtctcttatacgtttcaaatgtgtttgtaagttatggttttctcttatctct 7904713  T

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Target: chr4; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 265 - 325
Target Start/End: Complemental strand, 49049053 - 49048993
Alignment:
Q  265 ggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctctcaa 325  Q
    ||||| ||||||| | ||||||||||| |||||||||||||||||||||||||||||||||    
T  49049053 ggtgatgtctcttttacgtttcaagtgtgtttgtaagttatggttttctcttatctctcaa 49048993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 263 - 322
Target Start/End: Complemental strand, 7774285 - 7774226
Alignment:
Q  263 ccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctct 322  Q
    ||||||||||||||||||| |||||| || ||||||||| ||||||||||||||||||||    
T  7774285 ccggtgaagtctcttattcatttcaaatgtgtttgtaagctatggttttctcttatctct 7774226  T

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Target: chr4; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 266 - 325
Target Start/End: Complemental strand, 49044682 - 49044623
Alignment:
Q  266 gtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctctcaa 325  Q
    |||| ||||||| | ||||||||||| |||||||||||||||||||||||||||||||||    
T  49044682 gtgatgtctcttttacgtttcaagtgtgtttgtaagttatggttttctcttatctctcaa 49044623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 260 - 322
Target Start/End: Complemental strand, 33134285 - 33134223
Alignment:
Q  260 ttaccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctct 322  Q
    ||||||||||||||||||||||||||||| ||||||||||||   || |||||||||||||||    
T  33134285 ttaccggtgaagtctcttattcgtttcaaatgcgtttgtaagccttgattttctcttatctct 33134223  T

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Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 265 - 322
Target Start/End: Original strand, 7877344 - 7877401
Alignment:
Q  265 ggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctct 322  Q
    ||||||||||||||| |||||||| ||| |||||||| ||||||||||||||||||||    
T  7877344 ggtgaagtctcttatacgtttcaaatgcatttgtaagctatggttttctcttatctct 7877401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 261 - 321
Target Start/End: Original strand, 48870162 - 48870222
Alignment:
Q  261 taccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctc 321  Q
    |||||||||| ||||||||||||||||| |||||||||||||  ||||||| |||||||||    
T  48870162 taccggtgaattctcttattcgtttcaaatgcgtttgtaagtcttggttttttcttatctc 48870222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 261 - 321
Target Start/End: Original strand, 48885848 - 48885908
Alignment:
Q  261 taccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctc 321  Q
    |||||||||| ||||||||||||||||| |||||||||||||  ||||||| |||||||||    
T  48885848 taccggtgaattctcttattcgtttcaaatgcgtttgtaagtcttggttttttcttatctc 48885908  T

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Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 263 - 322
Target Start/End: Original strand, 7771026 - 7771085
Alignment:
Q  263 ccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctct 322  Q
    |||||||||||||||||  ||||||| |||||||||||||  ||||||||||||||||||    
T  7771026 ccggtgaagtctcttatatgtttcaaatgcgtttgtaagtcttggttttctcttatctct 7771085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 263 - 322
Target Start/End: Original strand, 7813102 - 7813161
Alignment:
Q  263 ccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctct 322  Q
    |||||||||| |||||| ||||||||||| |||||||| | |||||||||||||||||||    
T  7813102 ccggtgaagtatcttatacgtttcaagtgtgtttgtaaatcatggttttctcttatctct 7813161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 263 - 322
Target Start/End: Original strand, 7822591 - 7822650
Alignment:
Q  263 ccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctct 322  Q
    |||||||||| |||||| ||||||||||| |||||||| | |||||||||||||||||||    
T  7822591 ccggtgaagtatcttatacgtttcaagtgtgtttgtaaatcatggttttctcttatctct 7822650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 242 - 322
Target Start/End: Complemental strand, 45372534 - 45372454
Alignment:
Q  242 attcaaatccttttaatgttaccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctct 322  Q
    |||||||| ||  ||| ||| ||||||||||||||||| |||||||| || ||||||||||  ||||||||| ||||||||    
T  45372534 attcaaattctactaaggttgccggtgaagtctcttatacgtttcaaatgtgtttgtaagtcttggttttctattatctct 45372454  T

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Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 266 - 322
Target Start/End: Complemental strand, 49041591 - 49041535
Alignment:
Q  266 gtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctct 322  Q
    ||||||||||||||| ||||||| |||||||| ||||  ||||||||||||||||||    
T  49041591 gtgaagtctcttatttgtttcaaatgcgtttgcaagtcttggttttctcttatctct 49041535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 259 - 322
Target Start/End: Original strand, 7765239 - 7765302
Alignment:
Q  259 gttaccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctct 322  Q
    ||||||||||||||||||  |   |||||||||| |||||||||||||||||||| ||||||||    
T  7765239 gttaccggtgaagtctctcttagttttcaagtgcatttgtaagttatggttttctattatctct 7765302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 263 - 322
Target Start/End: Original strand, 7800259 - 7800318
Alignment:
Q  263 ccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctct 322  Q
    |||||||||| |||||| ||||||||||| |||||||| | ||||||||||||| |||||    
T  7800259 ccggtgaagtatcttatacgtttcaagtgtgtttgtaaatcatggttttctcttgtctct 7800318  T

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Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 263 - 322
Target Start/End: Original strand, 7907947 - 7908006
Alignment:
Q  263 ccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctct 322  Q
    ||||||||||||||||  ||||||||||  ||| |||||| |||||||||||||||||||    
T  7907947 ccggtgaagtctcttacacgtttcaagtctgttcgtaagtcatggttttctcttatctct 7908006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 267 - 322
Target Start/End: Original strand, 33133663 - 33133718
Alignment:
Q  267 tgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctct 322  Q
    |||||||||||||||||||||| | | |||||||| | ||||||||||||||||||    
T  33133663 tgaagtctcttattcgtttcaaattcatttgtaagctttggttttctcttatctct 33133718  T

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Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 263 - 321
Target Start/End: Original strand, 7789711 - 7789769
Alignment:
Q  263 ccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctc 321  Q
    |||||||||||||||||  ||||||| |||||||||||||  ||||||||| |||||||    
T  7789711 ccggtgaagtctcttatatgtttcaaatgcgtttgtaagtcttggttttcttttatctc 7789769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 259 - 321
Target Start/End: Original strand, 48891027 - 48891089
Alignment:
Q  259 gttaccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctc 321  Q
    |||| |||| ||||||||||| |||||||| |||||||||||||  |||||||||||| ||||    
T  48891027 gttatcggtaaagtctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttgtctc 48891089  T

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Target: chr4; HSP #25
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 259 - 324
Target Start/End: Complemental strand, 48171049 - 48170984
Alignment:
Q  259 gttaccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctctca 324  Q
    |||| |||||||||||||| | |||||||| || ||||||||||  |||||| |||||||||||||    
T  48171049 gttatcggtgaagtctcttctacgtttcaaatgtgtttgtaagtcttggtttgctcttatctctca 48170984  T

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Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 266 - 322
Target Start/End: Complemental strand, 7238173 - 7238117
Alignment:
Q  266 gtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctct 322  Q
    ||||||||||||||  ||||||| || ||||||||||  ||||||||||||||||||    
T  7238173 gtgaagtctcttatctgtttcaaatgtgtttgtaagtcttggttttctcttatctct 7238117  T

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Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 261 - 324
Target Start/End: Original strand, 48898342 - 48898405
Alignment:
Q  261 taccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctctca 324  Q
    |||| |||||||||||||  ||||||||||| ||||||||||  ||||| || |||||||||||    
T  48898342 tacctgtgaagtctcttacacgtttcaagtgtgtttgtaagtcttggttctcacttatctctca 48898405  T

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Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 263 - 318
Target Start/End: Original strand, 48902572 - 48902627
Alignment:
Q  263 ccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttat 318  Q
    ||||| |||||||| ||||||||||| || ||||||||||  ||||||||||||||    
T  48902572 ccggtaaagtctctcattcgtttcaaatgtgtttgtaagtcttggttttctcttat 48902627  T

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Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 269 - 321
Target Start/End: Original strand, 48875474 - 48875526
Alignment:
Q  269 aagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctc 321  Q
    |||||||| ||||||||||| |||||||| ||||  ||||||||||| |||||    
T  48875474 aagtctctaattcgtttcaaatgcgtttgcaagtcttggttttctctcatctc 48875526  T

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Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 260 - 322
Target Start/End: Original strand, 24309796 - 24309858
Alignment:
Q  260 ttaccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctct 322  Q
    |||||||| |||||||||||||||||||| | |||||||||||||||||||||||||||||||    
T  24309796 ttaccggttaagtctcttattcgtttcaaatccgtttgtaagttatggttttctcttatctct 24309858  T

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Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 246 - 321
Target Start/End: Original strand, 24322067 - 24322142
Alignment:
Q  246 aaatccttttaatgttaccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctc 321  Q
    |||||||| ||| ||| | |||||||||||||||||||||||| |||||||||||||  |||||||||||||||||    
T  24322067 aaatccttctaaggttgctggtgaagtctcttattcgtttcaaatgcgtttgtaagtcttggttttctcttatctc 24322142  T

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Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 259 - 322
Target Start/End: Original strand, 24340032 - 24340095
Alignment:
Q  259 gttaccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctct 322  Q
    ||||||||| |||||||||||||||||||| |  |||||||||| ||||||||| |||||||||    
T  24340032 gttaccggttaagtctcttattcgtttcaaatctgtttgtaagtcatggttttcacttatctct 24340095  T

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Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 260 - 318
Target Start/End: Original strand, 24415456 - 24415514
Alignment:
Q  260 ttaccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttat 318  Q
    |||||||| |||||||||||||||||||| |||||| ||||||  ||||||||||||||    
T  24415456 ttaccggttaagtctcttattcgtttcaaatgcgttcgtaagtcttggttttctcttat 24415514  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 273 - 321
Target Start/End: Original strand, 24366787 - 24366835
Alignment:
Q  273 ctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctc 321  Q
    |||| ||||||||||| || ||||| |||| ||||||||||||||||||    
T  24366787 ctctgattcgtttcaaatgtgtttgcaagtcatggttttctcttatctc 24366835  T

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Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 259 - 322
Target Start/End: Original strand, 15348480 - 15348543
Alignment:
Q  259 gttaccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctct 322  Q
    ||||||||||||||||||||| |||||||| |||||||||||||  ||||||||||||||||||    
T  15348480 gttaccggtgaagtctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttatctct 15348543  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 236 - 322
Target Start/End: Original strand, 12199902 - 12199988
Alignment:
Q  236 ttaatcattcaaatccttttaatgttaccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctct 322  Q
    |||||||||||||||||  | | ||| ||||||||||||||| |  ||||||| || |||||||||| |||||||||||||||||||    
T  12199902 ttaatcattcaaatcctgctgaggttgccggtgaagtctcttttatgtttcaaatgtgtttgtaagtcatggttttctcttatctct 12199988  T

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Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 236 - 322
Target Start/End: Original strand, 12444330 - 12444416
Alignment:
Q  236 ttaatcattcaaatccttttaatgttaccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctct 322  Q
    |||||||||||||||||  | | ||| ||||||||||||||| |  ||||||| || |||||||||| |||||||||||||||||||    
T  12444330 ttaatcattcaaatcctgctgaggttgccggtgaagtctcttttatgtttcaaatgtgtttgtaagtcatggttttctcttatctct 12444416  T

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Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 236 - 322
Target Start/End: Original strand, 12194896 - 12194982
Alignment:
Q  236 ttaatcattcaaatccttttaatgttaccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctct 322  Q
    |||||||||||||||||  | | ||| ||||||||||||||| |  ||||||| ||| ||||||||| |||||| ||||||||||||    
T  12194896 ttaatcattcaaatcctgctgaggttgccggtgaagtctcttttatgtttcaaatgcatttgtaagtcatggttatctcttatctct 12194982  T

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Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 236 - 322
Target Start/End: Original strand, 12439324 - 12439410
Alignment:
Q  236 ttaatcattcaaatccttttaatgttaccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctct 322  Q
    |||||||||||||||||  | | ||| ||||||||||||||| |  ||||||| ||| ||||||||| |||||| ||||||||||||    
T  12439324 ttaatcattcaaatcctgctgaggttgccggtgaagtctcttttatgtttcaaatgcatttgtaagtcatggttatctcttatctct 12439410  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 259 - 325
Target Start/End: Original strand, 21015394 - 21015460
Alignment:
Q  259 gttaccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctctcaa 325  Q
    ||||||||| | ||||||| | ||||||||||| ||||||||||||| |||||||||||||||||||    
T  21015394 gttaccggtcatgtctcttctacgtttcaagtgtgtttgtaagttattgttttctcttatctctcaa 21015460  T

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Target: scaffold0508 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 259 - 322
Target Start/End: Original strand, 11880 - 11943
Alignment:
Q  259 gttaccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctct 322  Q
    ||||||| | ||||||||||| |||||||| | ||||||||||| |||||||||||||||||||    
T  11880 gttaccgattaagtctcttatccgtttcaaatccgtttgtaagtcatggttttctcttatctct 11943  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 259 - 322
Target Start/End: Complemental strand, 11024997 - 11024934
Alignment:
Q  259 gttaccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctct 322  Q
    |||||||||||||||||| || |||||||| ||||||||||||| ||||||  |||||||||||    
T  11024997 gttaccggtgaagtctctcatacgtttcaaatgcgtttgtaagtcatggttagctcttatctct 11024934  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 263 - 322
Target Start/End: Complemental strand, 11006418 - 11006359
Alignment:
Q  263 ccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctct 322  Q
    ||||||||||| ||||| ||||||||||| |||||||||| ||||||  |||||||||||    
T  11006418 ccggtgaagtcacttatacgtttcaagtgtgtttgtaagtcatggttaactcttatctct 11006359  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 259 - 322
Target Start/End: Complemental strand, 11015985 - 11015922
Alignment:
Q  259 gttaccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctct 322  Q
    |||||||||||||||||| || |||||||| ||||||||||||| || |||  |||||||||||    
T  11015985 gttaccggtgaagtctctcatacgtttcaaatgcgtttgtaagtcattgttagctcttatctct 11015922  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 263 - 322
Target Start/End: Complemental strand, 47452363 - 47452304
Alignment:
Q  263 ccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctct 322  Q
    ||||||||||||||| | || ||||||||| ||| ||||| |||||||||||||||||||    
T  47452363 ccggtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctcttatctct 47452304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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