View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10567_high_7 (Length: 243)
Name: NF10567_high_7
Description: NF10567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10567_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 157; Significance: 1e-83; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 17 - 241
Target Start/End: Complemental strand, 6838448 - 6838224
Alignment:
| Q |
17 |
agggtggtctttcccatcccacccaaaccaactatgctgatagttgatacttggttgccattgtccttgtttgacagcaaatagttaattatttcttctt |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
6838448 |
agggtggtctttcccatcccacccaaaccaactatgctgatagttgatacttggttgccattgtccttgtaagacagcaaatagttaattatttcttctt |
6838349 |
T |
|
| Q |
117 |
tttcaccttctctaccacgtatgtcagatttattcaccaaggatgaagttggcgatctttttgaggattgcaagctaactacaccttcatgactagtgca |
216 |
Q |
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||||||||||||||||||||||| ||||| || |||||| |||| |||||| ||||||||||||||||| |||||| | ||||||| ||||||||| |
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| T |
6838348 |
tttcaccttctctaccacgtatggaagattcatccaccaaagatgcagttggagatctttttgaggattgtgggctaaccgcgccttcataactagtgca |
6838249 |
T |
|
| Q |
217 |
acttctttgagtcaatcccaaatca |
241 |
Q |
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||||||||| ||||||||||||||| |
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| T |
6838248 |
acttctttgtgtcaatcccaaatca |
6838224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 17 - 237
Target Start/End: Original strand, 8472043 - 8472263
Alignment:
| Q |
17 |
agggtggtctttcccatcccacccaaaccaactatgctgatagttgatacttggttgccattgtccttgtttgacagcaaatagttaattatttcttctt |
116 |
Q |
| |
|
||||||||||| ||||||||| |||||| ||||||||||||||||||||||||||||||||||| |||| || |||||||| || |||| |||||||| |
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| T |
8472043 |
agggtggtcttccccatcccaggcaaacccactatgctgatagttgatacttggttgccattgtcgttgtaagaaagcaaatacttgattaattcttctt |
8472142 |
T |
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| Q |
117 |
tttcaccttctctaccacgtatgtcagatttattcaccaaggatgaagttggcgatctttttgaggattgcaagctaactacaccttcatgactagtgca |
216 |
Q |
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| ||||||||||||||||||||| ||||| || ||| || |||| ||||||||||||||| |||||||||| ||||||| ||||||||| ||||| | | |
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| T |
8472143 |
tgtcaccttctctaccacgtatggaagattcatccactaaagatgcagttggcgatcttttcgaggattgcaggctaactgcaccttcataactagggaa |
8472242 |
T |
|
| Q |
217 |
acttctttgagtcaatcccaa |
237 |
Q |
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|||||| || || |||||||| |
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| T |
8472243 |
acttctctgtgttaatcccaa |
8472263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 97; Significance: 9e-48; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 17 - 221
Target Start/End: Complemental strand, 6572845 - 6572641
Alignment:
| Q |
17 |
agggtggtctttcccatcccacccaaaccaactatgctgatagttgatacttggttgccattgtccttgtttgacagcaaatagttaattatttcttctt |
116 |
Q |
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|
||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||| | ||||| |||| ||| ||||||| ||| ||||||||||||| |
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| T |
6572845 |
agggtggtcttccccatcccacccaaacccactatgctgattattgatacttggttgtcgttgtctttgtatgaaagcaaatggttgattatttcttctt |
6572746 |
T |
|
| Q |
117 |
tttcaccttctctaccacgtatgtcagatttattcaccaaggatgaagttggcgatctttttgaggattgcaagctaactacaccttcatgactagtgca |
216 |
Q |
| |
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| ||||| ||||||||| |||| |||||||| ||||| |||| ||||||||||||||||||||||||| ||||||| |||||||| |||| |||| |
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| T |
6572745 |
tctcaccctctctaccatatatgcaagatttatccaccagagatgcagttggcgatctttttgaggattgctggctaactgcaccttcaaaactactgca |
6572646 |
T |
|
| Q |
217 |
acttc |
221 |
Q |
| |
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||||| |
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|
| T |
6572645 |
acttc |
6572641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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