View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10567_low_1 (Length: 523)
Name: NF10567_low_1
Description: NF10567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10567_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 476; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 476; E-Value: 0
Query Start/End: Original strand, 17 - 512
Target Start/End: Complemental strand, 44015597 - 44015102
Alignment:
| Q |
17 |
aacaactacctcgtcggagaaattccatccctgattggtgagcttgaaaatttggagcagcttgatcttagtagaaacagtttgacaggtgaaattcctt |
116 |
Q |
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| T |
44015597 |
aacaactacctcggtggagaaattccatccctgattggtgagcttgaaaatttggagcagcttgatcttagtagaaacagtttgacaggtgaaattcctt |
44015498 |
T |
|
| Q |
117 |
ggagctttgggaacttgagctatttgaacaagcttattctcaacaataatttattaacaggctcaataccaaaatctgttagaaatctacagaagctaac |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44015497 |
ggagctttgggaacttgagctatttgaacaagcttattctcaacaataatttattaacaggctcaataccaaaatctgttagaaatctacagaagctaac |
44015398 |
T |
|
| Q |
217 |
tcttttggatttgagttacaatagcttatctggtagcatacctccagagattggtcatgttacaagcctaacaatcagtttggatttgagctcaaattca |
316 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44015397 |
tcttttggatttgagttataatagcttatctggtagcatacctccagagattggtcatgttacaagcctaacaatcagtttggatttgagctcaaattcg |
44015298 |
T |
|
| Q |
317 |
ttcattggtgaaatacctgattcaatgtctgctttgacacagttacaatcacttgatctttcaaggaacatgctttttggaggaattaaggttcttggtt |
416 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44015297 |
ttcattggtgaaataccagattcaatgtctgctttgacacagttacaatcacttgatctttcaaggaacatgctttttggaggaattaaggttcttggtt |
44015198 |
T |
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| Q |
417 |
ctcttactagtctcacttcactcaatatctcctacaacaacttctcaggtcctattccagtaactccattcttcaaaactctaacttctagttcat |
512 |
Q |
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| T |
44015197 |
ctcttactagtctcacttcactcaatatctcctacaacaacttctcaggtcctattccagtaactccattcttcaaaactctaacttctagttcat |
44015102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 137 - 313
Target Start/End: Complemental strand, 34765526 - 34765349
Alignment:
| Q |
137 |
tatttgaacaagcttattctcaacaataat-ttattaacaggctcaataccaaaatctgttagaaatctacagaagctaactcttttggatttgagttac |
235 |
Q |
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||||||| |||||||||||||||||||||| ||||||| ||| ||||| ||||||||| |||| | |||||||||||| ||||||||||||| || |
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| T |
34765526 |
tatttgagcaagcttattctcaacaataatattattaataggttcaatttgaaaatctgtaccaaattttcagaagctaacttttttggatttgagctat |
34765427 |
T |
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| Q |
236 |
aatagcttatctggtagcatacctccagagattggtcatgttacaagcctaacaatcagtttggatttgagctcaaat |
313 |
Q |
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| T |
34765426 |
aacagcttatccagttgcatgcctcaagagtttggtcatgcaacaagctttacaataagtttgtatttgagctcaaat |
34765349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 3e-18; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 91 - 234
Target Start/End: Complemental strand, 38801073 - 38800931
Alignment:
| Q |
91 |
aaacagtttgacaggtgaaattccttggagctttgggaacttgagctatttgaacaagcttattctcaacaataatttattaacaggctcaataccaaaa |
190 |
Q |
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||||||||||||| ||||||| ||||||||| |||| || || | || ||||||||| | || ||||||||||||| | ||| | |||||||||||| |
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| T |
38801073 |
aaacagtttgacatgtgaaatcccttggagcattggaaatttaaattacttgaacaagttcata-tcaacaataatttgcttacatgatcaataccaaaa |
38800975 |
T |
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| Q |
191 |
tctgttagaaatctacagaagctaactcttttggatttgagtta |
234 |
Q |
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|| |||||||| | |||||||||||||| |||||||||||||| |
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| T |
38800974 |
tcaattagaaatttgcagaagctaactctattggatttgagtta |
38800931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 443 - 512
Target Start/End: Complemental strand, 38800753 - 38800684
Alignment:
| Q |
443 |
atctcctacaacaacttctcaggtcctattccagtaactccattcttcaaaactctaacttctagttcat |
512 |
Q |
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|||| ||||||||| || |||||||||||||||||||| | ||||||||||| ||||||||||||||||| |
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| T |
38800753 |
atcttctacaacaatttatcaggtcctattccagtaacacgattcttcaaaagtctaacttctagttcat |
38800684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 427 - 509
Target Start/End: Original strand, 38820966 - 38821048
Alignment:
| Q |
427 |
tctcacttcactcaatatctcctacaacaacttctcaggtcctattccagtaactccattcttcaaaactctaacttctagtt |
509 |
Q |
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||||||||| | ||||||| |||||||| ||||||||||||||||||||||| ||||||||| || || ||||||||||| |
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| T |
38820966 |
tctcacttcccagaatatcttatacaacaatttctcaggtcctattccagtaacaccattcttctaatcttcaacttctagtt |
38821048 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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