View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10567_low_10 (Length: 325)
Name: NF10567_low_10
Description: NF10567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10567_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 12 - 313
Target Start/End: Original strand, 525501 - 525802
Alignment:
| Q |
12 |
agagaacgtacgtagagggagctgatgtgataagtaagtatagaagaatctaagatgaacccaaagaaaacaacaccaaacaaccaaactaggaataaat |
111 |
Q |
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|||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
525501 |
agaggacgtatgtagagggagctgatgtgataagtaagtatagaagaatctaagatgaacccaaagaaaacaacaccaaacaaccaaactaggaataaat |
525600 |
T |
|
| Q |
112 |
atgtaatgcaagagcaagaggcaaagacagcagtagtagtactggtggtagtatactgagggaggaaattgagacatatgagtaattaagagttcagaag |
211 |
Q |
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| T |
525601 |
atgtaatgcaagagcaagaggcaaagacagcagtagtagtactggtggtagtatactgagggaggaaattgagacatatgagtaattaagagttcagaag |
525700 |
T |
|
| Q |
212 |
gtattcactccaccacaccaaacatcagagcnnnnnnnttaataaatttaaaactcatgagattacctttctgcttctctgtctgtctctatagtatatc |
311 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
525701 |
gtattcactccaccacaccaaacatcagagcaaaaaaattaataaatttaaaactcatgagattacctttctgcttctctgtctgtctctatattatatc |
525800 |
T |
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| Q |
312 |
ct |
313 |
Q |
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|| |
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| T |
525801 |
ct |
525802 |
T |
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